Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 246 4e-60 seq2 113 7e-20 seq4 109 8e-19 >seq7 Length=1807069 Score = 246 bits (272), Expect = 4e-60 Identities = 566/843 (67%), Gaps = 27/843 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| | |||||||| ||||| ||||| || || ||||| | ||| ||| || | || Sbjct 103445 ATTTGGCAGATGTACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATCAACCTC 103504 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| |||| ||||| | ||| ||| | ||||| || || | Sbjct 103505 GCCCCCGACCTCCACGACTGGGACAACAAGCTGAATGACAACGAGCGCTTCTTCATCGAG 103564 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || || || ||||||||||| || || || || || Sbjct 103565 CACGTCCTCGCGTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGAG-CG 103623 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 |||| ||| | || | |||| | || ||||| ||||| |||||||| Sbjct 103624 CTTCTGCGCCGAGGTCCAGATCTCCGAGGCCAAGACGTTCTACGGCTTCCAGATCATGAT 103683 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-CGC 125316 |||||| | |||||||| | |||||| || || |||| |||||| ||||| ||| Sbjct 103684 GGAGAACATCCACTCGGAGACGTACTCGCTCCTCATCGACACGTACATCCGCGACAACGC 103743 Query 125317 AACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTC 125376 || || | || || | || |||||||| | || | || || ||||| Sbjct 103744 G-CGCCGCCAGTTCCTGTTCCAGGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCG 103802 Query 125377 AATGGGTGATTCGGTGGATCGATGACGACAAG---TCTTCGTACGCCGACAGACTGGTGG 125433 | |||| | || |||||| ||||||| || |||| || || | ||| | | Sbjct 103803 ACTGGGCCCTGCGCTGGATCTC---CGACAAGCGCTCCTCGTTCGGAGAGCGTCTGATCG 103859 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | ||||||||||| |||||||||||||| ||||| || ||| ||||||| ||||||| Sbjct 103860 CGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGCTCA 103919 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| ||||||||||| || ||| | |||||| | || ||||| ||||||| Sbjct 103920 AGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCTCGTGACGAGG 103979 Query 125554 GCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGAT 125613 | || ||| ||||| || || || || || | | || || || || | | Sbjct 103980 GTCTCCACACCGACTTCGCGTGCCTCCTCTT---CACCCACCTCCG-CCGCCGTCCTCAC 104035 Query 125614 CCAG---CGATGAA-AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAG 125669 || | |||| || ||| ||||||| || ||||| | ||| || || ||| Sbjct 104036 CCGGACACGATCAACAAGATCATCAA---------GGAGGCCGTCAAGATCGAGCAGGAG 104086 Query 125670 TTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAG 125729 || || ||||| |||| || ||| | || ||||||||| |||||| |||||| || Sbjct 104087 TTCCTGACCGAGGCCCTGCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAG 104146 Query 125730 TACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAAC 125789 ||||| |||||||| || || || || || || | | | |||| | | ||| Sbjct 104147 TACATCGAGTTTGTCGCCGACCGCCTGCTCGTCGCCCTCGGTAACGACAAGGTCTGGAAC 104206 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 | || ||||| ||||||||| | || || || |||| ||| ||||||| ||| Sbjct 104207 TCGGCCAACCCCTTCGATTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTC 104266 Query 125850 GAG 125852 ||| Sbjct 104267 GAG 104269 >seq2 Length=2999908 Score = 113 bits (124), Expect = 7e-20 Identities = 310/467 (66%), Gaps = 16/467 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || ||||| || ||| Sbjct 497807 CAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCATGCCGAC 497866 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 | || ||||| |||| | ||||| ||| || || |||| || ||| | ||| Sbjct 497867 ATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGAC 497926 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---CGACGGTGGC 97052 | || || || |||||| | | || | ||||||||||| ||| | ||||||| Sbjct 497927 CTCTTCTACGCTCTCTGGATCTCCGACCTCTTCATGAAGCGTGTCGAGTCTGACGGTG-- 497984 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTC---CGATTGCTGGGGCGAA 97109 |||||| ||| |||||||||| || ||||| || || || | || ||| Sbjct 497985 -ACTGGACCCTCATGTGCCCCGCTGAGTGCCCCGGCCTCTCGGACGTTCACT---CCGAG 498040 Query 97110 GAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGA 97168 ||||| ||| |||| | |||||||| | ||| | || |||| | || | Sbjct 498041 GAGTTCGAGAAGCTGTACGAGAGCTACGAGCGTGCCGGCAAGGGTCGCAAGACCA-TCAA 498099 Query 97169 TGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 || | |||| |||||| |||||| | || ||| ||||| || || | || Sbjct 498100 GGC-CCAGAAGCTGTGGTTCGCCATCCTCGAAGCCCAGACCGAGACCGGTGGCCCCTTCA 498158 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | ||||||||||| | | || ||||| ||||| | ||| | |||||||||||| Sbjct 498159 TGCTCTACAAGGACGCTGCAAACCGCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGT 498218 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||||| || || | |||||| | || || |||||| Sbjct 498219 CGTCCAACCTCTGCACTGAGATCATTGAGTACTCTTCGCCTGACGAG 498265 >seq4 Length=2739924 Score = 109 bits (120), Expect = 8e-19 Identities = 399/616 (65%), Gaps = 28/616 (5%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||||| ||||| || || || | ||| |||||||| || || ||||| Sbjct 971128 TTGCGGAAGAAGATGAGACCGGCACGGGGGCCACGGAGGGTCTTGTGGGTCGTCGTGGTG 971069 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGC--CCGCAATCAAGCCCGCAA 127219 || | ||| || || || ||||| | || || || || | || | | |||| | Sbjct 971068 ACGACGTCGCAGTAGTCGAAGGG-CGAGTTCTG-CTCGGCGGCAGCGACGAGACCCGAGA 971011 Query 127220 TGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCAT--CGGCAATCTCTCGGAATCG 127277 |||| || || |||| |||||| ||| ||| |||| | |||| ||||| |||| || Sbjct 971010 TGTGGGCCATGTCGGACATCAGGTAGGCGCC--CTGCTTGTCGGCGATCTCGCGGA-TCT 970954 Query 127278 TCTA-TAGTCCAAGCGCCGAGGATAGC---AACTGGTGCCGGCTATGATTAGCCTAGGTT 127333 ||| |||||| || || || ||| ||| || | | | || | | || | Sbjct 970953 TCTTGTAGTCCCAGTCACGGGGGTAGGCGGAACCACCGCAGACGACGAGTCGG---GGCT 970897 Query 127334 TGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCA 127393 |||| | ||||| | || || | | ||||||||| || ||||| || || | Sbjct 970896 TGAAGATGTTGGCGTTGGTGGAGAGCTGCTCGTAGTCGACGTAGCCGGTCTGGGGGTCGA 970837 Query 127394 CCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT-------GCGGAAT 127446 | |||||| | | ||| ||| || | |||| | || |||| | Sbjct 970836 CGCGGTACGGGAACGACTGGAAGTAGATCGACGACGCGGTGATCTTCTTCTTGGCGGTGT 970777 Query 127447 -----CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCG 127501 ||||| |||||||| || |||||||| || |||| ||||||| | | || | Sbjct 970776 AGTAGCCGTGGGTCAGGTGTCCACCGTCGGGGAGGCCGAGACCCATGACGCGGTCCTGGG 970717 Query 127502 GTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACAC 127561 | || | | | ||| || ||||||||||||| ||||||| ||||| || || || Sbjct 970716 GGTTGATCAGGGCGGTGAACGCGGCAAAGTTGGCGGTCGAGCCAGAGTAGGGCTGGACGT 970657 Query 127562 ACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCA 127621 || ||||| | ||| || | |||||||| |||| |||| | | || Sbjct 970656 TGACGCCCCACTTGGAGGGGTCAAGGTTGAACGCCTTGAGGGCACGCTCGCGGGTCAGGT 970597 Query 127622 GTTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCG 127681 |||| | || || |||||||||| || ||||| || ||||| |||||| | Sbjct 970596 TCTCGAGCTGGTCAATGTACTCGTTACCGCCGTAGTAACGGGCGCCGGGGAGACCCTCAG 970537 Query 127682 AGTACTTGTTGATGAG 127697 ||||||||||| |||| Sbjct 970536 AGTACTTGTTGGTGAG 970521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059033261680