Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq6 96.9 3e-15 seq3 89.7 4e-13 >seq4 Length=2739924 Score = 111 bits (122), Expect = 1e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || ||||||| || || || || | || ||| | ||| | |||| Sbjct 1418537 ACCGGTAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCG 1418478 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || ||||| || || |||||||| Sbjct 1418477 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGCAAG 1418418 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| ||||||| |||||||| || || || || ||| Sbjct 1418417 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACC 1418364 >seq6 Length=2071177 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| ||||| || || | | Sbjct 2048163 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 2048222 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| ||||| || Sbjct 2048223 GACACTATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGGATTCCTCCCGACCAG 2048282 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| || ||| |||| || |||||| Sbjct 2048283 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGGACCCTCTCGGACTACAAC 2048342 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 2048343 ATCCAGAAGGAGTCGACC 2048360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || || || | || Sbjct 2048391 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATCACTCTGGAGGTTGAGTCGTCC 2048450 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || ||||||||||| || || ||||| || Sbjct 2048451 GACACGATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 2048510 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | ||||| ||||| |||| || |||||| Sbjct 2048511 CAGCGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACGCTCTCAGACTACAAC 2048570 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | || | || | || |||||| Sbjct 2048571 ATCCAGAAGGAGTCGACTCTGCATCTCGTCCTCCGTCTCCGTGGAGGT 2048618 >seq3 Length=2964310 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | || || | ||| | |||| Sbjct 1685638 ACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAGTCC 1685697 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || ||||| || || ||||| || || |||||||| Sbjct 1685698 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCCGGCAAG 1685757 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| | || || |||||||| || || || || ||| Sbjct 1685758 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACC 1685811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727907922170