Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 147 2e-30 seq6 113 4e-20 seq4 96.9 3e-15 seq3 91.5 1e-13 >seq7 Length=1807069 Score = 147 bits (162), Expect = 2e-30 Identities = 298/438 (68%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 47136 GAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCG 47195 || ||| ||||||| |||||| |||||||||| |||||||||||||| || ||| | Sbjct 103847 GAGCGTCTGATCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCC 103906 Query 47196 ATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATC 47255 || || | | || | || | ||||||||||||||||| ||||||||| ||| Sbjct 103907 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATC 103966 Query 47256 TCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACA-ACACTAGAGTCG- 47313 || | ||||| || || |||||| |||| || || ||| || || ||| | || Sbjct 103967 TCTCGTGACGAGGGTCTCCACACCGACTTCGCGTGCCTCCTCTTCACCCACCTCCGCCGC 104026 Query 47314 -ATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 || | ||| ||| ||| | | || | || |||||| || ||| Sbjct 104027 CGTCCTCACCCGGA------CACGATCAACAAGATCATCAAGGAGGCCGTCAAGATCGAG 104080 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 |||||| | ||||||| ||||||| || | | || |||||||| || | ||| Sbjct 104081 CAGGAGTTCCTGACCGAGGCCCTGCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCATG 104140 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCAAGAT 47491 | |||||||||| |||||||||||||||||||||| || | ||| | |||| | Sbjct 104141 TGCCAGTACATCGAGTTTGTCGCCGACCGCCTGCTCG-TCGCCCTCGGTAACGACAAGGT 104199 Query 47492 TTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAA 47551 | || | | || || ||||| || ||| | | || ||||| |||||||| |||| Sbjct 104200 CTGGAACTCGGCCAACCCCTTCGATTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAA 104259 Query 47552 CTTTTTCGAGAAGCGCGT 47569 ||| |||||| ||| || Sbjct 104260 CTTCTTCGAGTCGCGTGT 104277 >seq6 Length=2071177 Score = 113 bits (124), Expect = 4e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| |||||||| || ||||||||| Sbjct 2048317 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGAATCCCCTCCTTG 2048258 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| ||| ||||| ||||| | | ||||||| | |||||| || | ||| | Sbjct 2048257 TCCTGGATCTTCGACTTGACGTTGT-CAATAGTGTCCGAAGACTCGACCTCAAGGGTGAT 2048199 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||||||||| || || || |||||||| Sbjct 2048198 GGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2048163 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | |||||| || || ||||| |||||| Sbjct 2048587 GTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGTCCGTCCTCGAGCTGCTTTCCA 2048528 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| ||||| || ||||||||||||||| ||| || ||| Sbjct 2048527 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTC 2048468 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||| || || | || | ||| || || || || || Sbjct 2048467 ACATTGTCGATCGTGTCGGACGACTCAACCTCCAGAGTGATCGTCTTCCCCGTGAGGGTC 2048408 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 2048407 TTCACGAAGATCTGCAT 2048391 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 ||||||| ||| || ||||| || || ||| |||| | |||||||| ||||| || || Sbjct 2048050 CGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAAT 2047991 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| || ||| ||| | | |||| |||||| | |||||| || Sbjct 2047990 TCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTGTCAGATGACTCGACCTC 2047931 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTT 127098 || ||| | || |||||||| || || || Sbjct 2047930 GAGGGTGATGGTCTTGCCGGTGAGGGTCTT 2047901 >seq4 Length=2739924 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 1418365 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1418424 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| ||| |||| Sbjct 1418425 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTG 1418484 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| |||||||| |||||| |||| || | || || ||||| || Sbjct 1418485 ACGTTG-TCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTACCGGTGAG 1418540 >seq3 Length=2964310 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| || || ||||| || || Sbjct 1685810 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 1685751 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| ||||||||||||||| ||| || |||| Sbjct 1685750 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 1685691 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 | |||| |||| ||||||| |||||| || | ||| | || ||||| ||||| Sbjct 1685690 ACGTTG-TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAG 1685635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500693012320