Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 149 7e-31 seq3 132 5e-26 seq4 123 3e-23 >seq6 Length=2071177 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||||| || |||||| ||||| |||||||| || Sbjct 2048617 CCTCCACGGAGACGGAGGACGAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGAG 2048558 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| || || || |||| |||||||||||||| ||| Sbjct 2048557 AGCGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 2048498 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| |||| | | | | ||||||| ||| || || Sbjct 2048497 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATCGTGTCGGACGACTCAACC 2048438 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || ||||| || || || || ||||| ||||| Sbjct 2048437 TCCAGAGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 2048391 Score = 138 bits (152), Expect = 1e-27 Identities = 148/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| |||||||||||||||||||| Sbjct 2048354 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCGGCGAA 2048295 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||||| || | | |||||||||| ||||||| ||||| ||| Sbjct 2048294 GATGAGGCGCTGCTGGTCGGGAGGAATCCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 2048236 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| ||||| ||||| || || | Sbjct 2048235 TGTCAATAGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGA 2048176 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2048175 CGAAGATCTGCAT 2048163 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||| || || ||||| | || || ||||||||||||||||| || | |||||||| Sbjct 2048063 TGTAGTCAGAGAGCGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCT 2048004 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||||| || | | |||||||||| |||||| ||| | | | | ||||| Sbjct 2048003 GGTCGGGGGGAATTCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTGTCAG 2047944 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 || || || || | |||||||| ||||| || || || || Sbjct 2047943 ATGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 2047901 >seq3 Length=2964310 Score = 132 bits (146), Expect = 5e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 1685805 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1685746 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 1685745 GATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1685687 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | |||||| || || || || | |||||||| ||||||||||| Sbjct 1685686 TGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAG 1685635 >seq4 Length=2739924 Score = 123 bits (136), Expect = 3e-23 Identities = 132/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 1418370 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1418429 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| ||||||| ||||| ||| Sbjct 1418430 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 1418488 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || || || || | |||||||| || || || || Sbjct 1418489 TGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTACCGGTGAG 1418540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238272821360