Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 6e-14 seq3 89.7 7e-13 >seq1 Length=3669090 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 82010 AATTCCCGGTGGAGCCGAAACCGCCGGCGCCGCGCGCGGTCGAGGCGAGGTCATCGACCT 82069 ||| |||| |||| ||||| ||||| ||||||| | ||| | |||| || ||||||| Sbjct 1853741 AATGCCCG-TGGACCCGAAGCCGCCCTCGCCGCGGACAGTCTCGTCGAGCTCGTCGACCT 1853683 Query 82070 CGACGACGGGCACGATCAGGCACTGCTCAAGGATGATCTGGGCGATCCGGTCGCCCGGAT 82129 ||||| ||||| | || || || ||||||||||| ||| ||||| ||||| || | || Sbjct 1853682 CGACGGCGGGCGCCATGCGGACCTCCTCAAGGATGAGCTGCGCGATGCGGTCTCCAGCAT 1853623 Query 82130 TGA 82132 ||| Sbjct 1853622 TGA 1853620 >seq3 Length=2964310 Score = 89.7 bits (98), Expect = 7e-13 Identities = 298/456 (65%), Gaps = 33/456 (7%) Strand=Plus/Minus Query 82015 CCGGTGGAGCCGAAACCGCCGGCGCCGCGCGCGGTCGAGGCGAGGTCATCGACCTCGACG 82074 || || |||||||| ||||||||||||||| || | ||||||| |||||||| | Sbjct 2232428 CCCGTCGAGCCGAAGCCGCCGGCGCCGCGCTGCGTGCTGTCGAGGTCGGCGACCTCGCGG 2232369 Query 82075 ACGGGCACGATCAGGCACT--GCTCAAGGATGATCTGGGCGATCCGGTCGCCCGGATTGA 82132 | |||| | || ||| | |||| ||||||| ||||||||| ||||||||| | |||| Sbjct 2232368 ATGGGCGCCAT--GGCGATGCGCTCGAGGATGAGCTGGGCGATGCGGTCGCCCTGGTTGA 2232311 Query 82133 -------TCACCACGTTCTCGCCGTAGAACGGCGCGCCGAAGACGTCGGCCTGCTTGCCG 82185 ||| | | | ||| | | || | | || ||| | | || | Sbjct 2232310 CTGTGCGTCAGCTAGACTCCTGCGTTG--CAGCTCACTCTTGAACTCGTCGTCATT---G 2232256 Query 82186 TGGTGGGTCAGGATGACCTTGACCTCGCCGGTGTAGTCCTCGTCCACCACGCCGGCCAGG 82245 |||| | |||| |||||||||||||||| |||||| ||| || |||||||| Sbjct 2232255 TGGTTGAAGAGGACGACCTTGACCTCGCCGCGGTAGTCGCAGTCGACGACGCCGGCACCC 2232196 Query 82246 ACGCCCAGGCC---CTNNNNNNNNNNNNNNGAGCGGGGCGCGACGCGGGCGTAGGT-GCC 82301 | | | ||| || ||||| ||||||| ||| |||| || | Sbjct 2232195 GTGTCGATGCCGTGCTTGGCGGCGAGGCCCGAGCGCGGCGCGATGCGCCCGTACGTCTCG 2232136 Query 82302 TTCGGG--CGCGGTCATCGCCAGCCCCGTCGACA-GGAGCGCGCGCTCCCCAGGCCGCAG 82358 | |||| |||| |||| | || | ||||| || || ||||| | | | |||| Sbjct 2232135 TGCGGGATCGCG---ATCGAGATGCCGGCCGACACGGTGC-CGCGCCCGCGCTTCGGCAG 2232080 Query 82359 AGTCACCTTCTCGGTCCCGTCATAGTAGACGTCCAGGCCGGCGGCCTTGGGCGAGCCGCG 82418 ||| | ||||| ||| | || | ||| | ||||| | |||||||||||| Sbjct 2232079 CGTCGTGTCCTCGGCTGCGT-ACAG--GTCGTAC---CCGGCCGAGAGGGGCGAGCCGCG 2232026 Query 82419 CGTCGGCAGCTTGGCGGTCGGCGTCAGGCGCTTGAC 82454 |||||||| ||||||| |||| ||||| ||||||| Sbjct 2232025 CGTCGGCATCTTGGCGTTCGGGCTCAGGAGCTTGAC 2231990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715775838950400