Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 259 9e-64 seq7 241 2e-58 >seq2 Length=2999908 Score = 259 bits (286), Expect = 9e-64 Identities = 828/1274 (65%), Gaps = 39/1274 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 |||||||| |||||||||||||| |||||| |||||| || | |||||| | || Sbjct 498567 AGGGCAGCATGGTAGATGGTCTCGAAGATCTGGAGGTTGAG-CTGACGAGCCTCGCGCGA 498509 Query 221479 AGTGAAGGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||||||||| || || | |||||| |||||| || ||||| || |||| ||||| Sbjct 498508 GTCGAAGGGCATGCGGAGAGCCATGAAAGT-GTCGGCAAGACCCTGGACACCGAGACCGA 498450 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 ||| | ||| | | |||| || | || || || ||||| || ||||| | || Sbjct 498449 CGGGACGGTGGCGCATGTTCGAGTTGCGAGCCTCAGGGACGGGGTAGTAGTTGCGGGTGA 498390 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | | || |||||| |||| ||| || | |||| ||||||| | ||| Sbjct 498389 TAACCTGGTCAAGGTTCCTGGTGACGACCTTGGTGATCTCGTGGAGCTTCTTGAAGTTGT 498330 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | | | || ||| || || | || |||| | ||||| Sbjct 498329 AGGTCTTGTTTTCGAAGTCAACGAAGG---CAGGAAGAGCGATCGAGGCAA--------- 498282 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 |||| || ||||| |||||||| | |||| |||||||| || ||||||||| Sbjct 498281 GGTTGCAGACGGCGACCTCGTCAGGCGAAGAGTACTCAATGATCTCAGTGCAGAGGTTGG 498222 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 |||||||||| || ||||| | || || |||||||| || |||||||||||||||| Sbjct 498221 ACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGCGGTTTGCAGCGTCCTTGTAGA 498162 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| ||||| || || ||||| ||| || | || || | ||| || | ||||| Sbjct 498161 GCATGAAGGGGCCACCGGTCTCGGTCTGGGCTTCGAGGATGGCGAACCACAGCT-TCTGG 498103 Query 221898 CGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 || | ||| | |||| | |||| |||| | || ||| ||| Sbjct 498102 GCCTTGATGGTCTTGCGACCCTTGCCGGCACGCTCGTAGCTCTCGTAC---------AGC 498052 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | || ||||| || ||| ||||| ||||| || Sbjct 498051 TTCTCGAACTCCTCGGAGTGAACGTCCGAGAGGCCGGGGCACTCAGCGGGGCACATGAGG 497992 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||||| || | ||| | || |||||||||||| | |||||| || || | Sbjct 497991 GTCCAGTCACCGTCAGACTCGACACGCTTCATGAAGAGGTCGGAGATCCAGAGAGCGTAG 497932 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 ||||| || | || || ||||||| |||| ||| || | || || | || || Sbjct 497931 AAGAGGTCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGTCG 497872 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || ||||| || ||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 497871 AAGATGTCGGCATGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGGCGCTTGTTGCCA 497812 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| || || | | ||||| | || || || | || || | ||||| Sbjct 497811 CCCTGGTCGACGTAACGAGCAGTAGCGTCGTAGGCACGGAGCATAGGAACGATACCGTTC 497752 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACAT 222309 || ||||||||||| |||||||| || ||| | | ||| ||| | | Sbjct 497751 GAGTAGCCGTTGGTGCCAGCAATGTACGAGCCCTTGGCGCGGATGTT-GTGGATGTGGAG 497693 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 ||||| |||||||| || |||||| |||||| ||||||| ||||| ||| || Sbjct 497692 ACCGATGCCACCGGCCGTCTTGGAGATCTGCGCGCAGGTCTTGAGGGTGTCGTAGATACC 497633 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA 222429 || || ||||||||||| | | | || || |||||||||||||| | | | | Sbjct 497632 GTCGATGGAGTCCTCCTTCATGGCGACGAGGAAGCAAGACGACATCTGGGCGTGAGGAGT 497573 Query 222430 ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTA 222489 | | ||| || ||||| || |||||| || ||||| | | ||||| || | ||| Sbjct 497572 GCCCGAGTTGAAGAGCGTCGGTGAGGCGTGCGTGAAGTAACGCTCCGACATGAGGTTGTA 497513 Query 222490 CGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACAT 222549 |||||| | ||| | |||||||||| |||||||| | || | ||| ||| Sbjct 497512 CGTCTCGATGACCTTCTCGATGTTGTCGCCGTGAATACCGACGGAAACACGCATCAGCAT 497453 Query 222550 GTACTGGGGCCTCTCCACAGGACCCT--TGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607 || |||||| | ||| | || | | | | || ||| ||||| || || || Sbjct 497452 GTGCTGGGGGCGCTCGGC--GATCTTGCCGTCGATGCGGAGGAGGTAGGAGCGCTCGAGG 497395 Query 222608 GTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGC 222667 |||||||| || ||||||||| | | ||||| | | | | | | ||| ||||| || Sbjct 497394 GTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCGCGGTCATAGATGATGGCAGCGTCGAGG 497335 Query 222668 TCCGACTTGTGCTT 222681 || ||||| ||| Sbjct 497334 GCCTCCTTGTTCTT 497321 Score = 116 bits (128), Expect = 7e-21 Identities = 221/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 25805 ACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG 25864 |||| || ||||| ||| ||||||| ||||| ||||||| |||| | | || | | Sbjct 2063154 ACATTCCTTGCATCCAGAAGAAGGCGGACTGGGCGATGAAGTACATCA-CGGACAAGGTG 2063212 Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 | | | || | || ||| | || |||||| |||||| ||||| || ||| ||| | Sbjct 2063213 CC-CTTCCGGATA-CGTCTGATTGCGTTTGCTTGTGTGGAAGGCATTTTCTTCTCCGGGT 2063270 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCC 25983 |||| ||||| ||||| ||||| ||| || || ||||| ||||| ||||| || Sbjct 2063271 CGTTCGCGGCAATCTTTTGGCTGAAGAAGCGTGGTCTCATGCAGGGGCTC-ACTTTCTCG 2063329 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||||||||||| | || |||||||| || | || || ||||| || || |||| Sbjct 2063330 AACGAGCTCATCAGTCGAGATGAGGGTCTGCATACCGACTTCGCCTGTCTTCTGTACA-- 2063387 Query 26044 GGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 |||| | ||||| || |||||| || || || |||||||| | | Sbjct 2063388 -GCCATCTCAAGCACAAGTGCTCGCAAGAGGAAGTTCACGCCATTGTCAAAGAGTCGCTC 2063446 Query 26104 GAGATCGAGAAGGAGTTT 26121 || || |||||||||||| Sbjct 2063447 GATATTGAGAAGGAGTTT 2063464 >seq7 Length=1807069 Score = 241 bits (266), Expect = 2e-58 Identities = 558/837 (67%), Gaps = 26/837 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| || || |||||||||||| ||||| | || Sbjct 103445 ATTTGGCAGATGTACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATCAACCTC 103504 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTC-TC 25590 ||| ||| | ||| |||| || ||| || || ||||| || | ||| || Sbjct 103505 GCCCCCGACCTCCACGACTGGGACAACAAGCTGAATGACAA--CGAGC-GCTTCTTCATC 103561 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 || |||| | || ||||| || || || || || || || |||||||| || |||| Sbjct 103562 GAGCACGTCCTCGCGTTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGAG 103621 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | || || ||| | ||||||||| |||||||| |||||||| Sbjct 103622 CGCTTCTGCGCCGAGGTCCAGATCTCCGAGGCCAAGACGTTCTACGGCTTCCAGATCATG 103681 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC 25767 || || || | ||||| ||| ||| | ||| || || |||||||| ||| Sbjct 103682 ATGGAGAACATCCACTCGGAGACGTACTC---GCTCCTCATCGACACGTACATCCGCGAC 103738 Query 25768 GTCGC-CGA-GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 ||| || | || || ||||| |||||||| ||| ||| ||||||||| || Sbjct 103739 AACGCGCGCCGCCAGTTC--CTGTTCCAGGCCATCGACACCATCCCCTGCATCAAGAAGA 103796 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 |||| |||||| || |||||| | | || || | |||| || ||||| ||| Sbjct 103797 AGGCCGACTGGGCCCTGCGCTGGATCTCCGACAAGCGCTCCTCGTTCGGAGAGCGTCTGA 103856 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | || || || || || ||||||||||| ||| || ||||| ||| |||||||||||| Sbjct 103857 TCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCGTCCATCTTCTGGC 103916 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || || ||||||||| || || ||||||||||||||| | |||| Sbjct 103917 TCAAGAAGCGCGGCCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCTCGTGACG 103976 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 |||||||||||| || || || ||||| |||| ||| |||| | | || | ||| Sbjct 103977 AGGGTCTCCACACCGACTTCGCGTGCCTCCTCTTCAC---CCACCTCCGCCGCCGTCCTC 104033 Query 26066 CTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 | || || || ||| |||||||| ||||| || |||||||| ||||||| | Sbjct 104034 ACCCGGACACGATCAACAAGATCATCAAGGAGGCCGTCAAGATCGAGCAGGAGTTCCTGA 104093 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 | ||||||||| || |||||| |||| ||||| | Sbjct 104094 CCGAGGCCCTGCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAGTACATCG 104153 Query 26186 AGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCC 26243 ||| ||| ||||||| ||||| || ||| || || || || ||| | || | Sbjct 104154 AGTTTGTCGCCGACCGCCTGCTCGTCGCC--CTCGGTAACGACAAGGTCTGGAACTCGGC 104211 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 ||||| ||||| || ||||| | || ||| || | || ||| |||||||||| || Sbjct 104212 CAACCCCTTCGATTTCATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 104268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844591009920