Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 165 2e-35 seq6 113 1e-19 seq4 84.2 7e-11 >seq2 Length=2999908 Score = 165 bits (182), Expect = 2e-35 Identities = 611/952 (64%), Gaps = 13/952 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| || | ||||| || || || ||||| || |||||||| || || || Sbjct 1196930 GCTATTGGAATTGACCTTGGTACCACCTACTCGTGTGTCGCCGTTTGGCAGAACGACCGC 1196989 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || || || |||||| | || || || || || || || || ||| Sbjct 1196990 GTTGAGATCATCGCGAACGACCAGGGTAACCGTACCACCCCCTCTTATGTCGCGTTCACC 1197049 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || || ||| | || || || || | || || || | || Sbjct 1197050 GACTCGGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCGTACAAC 1197109 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACA 349434 || || || || || ||||| || || || | | || || ||| | || || Sbjct 1197110 ACCGTCTTCGACGCCAAGCGTCTCATCGGACGCAAGTTCTCCGACCCCGAGGTC----CA 1197165 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || || | || || | || || | || || | ||| || || || || Sbjct 1197166 GTCCGACATGAAGCACTGGCCCTTCAAGGTCATTG-ACAAG--GGAACCAAGCCCTACAT 1197222 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || || ||||| | || || || | ||||| || || || || ||||| Sbjct 1197223 CCAGGTCGAGTACCGCGGTGAGGAGAAGCAGTTCTCTCCCGAGGAGATCTCGTCCATGGT 1197282 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | | || |||||||| | ||||| || || | |||| ||| || | | || || Sbjct 1197283 CCTCATCAAGATGAAGGAGACCGCTGAGGCCTACCTCGGTGGAACCGTCTCCAAGGCCGT 1197342 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || || || || ||||| || || || | |||||| || || || || || || | Sbjct 1197343 CATCACCGTCCCCGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCCGGTAC 1197402 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| | || | | || || | || || || || ||||| ||||| || || || || Sbjct 1197403 CATCTCCGGTCTTGAGGTCCTCCGTATCATCAACGAGCCCACCGCTGCCGCCATCGCCTA 1197462 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | ||| || || || |||| || || || | |||||||| Sbjct 1197463 CGGTCTCGACAAGAAGTCTGAGGGCGAGAAGAACGTTCTCATCTTCGACCTTGGTGGTGG 1197522 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || || ||||| Sbjct 1197523 TACCTTCGATGTCTCCCTTCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACTGC 1197582 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || |||||||| || || ||||| || || || || || || || | Sbjct 1197583 CGGTGACACCCACCTTGGTGGTGAGGACTTTGACAACCGCCTTGTCAACCACTTCGTCCA 1197642 Query 349915 AGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCC 349973 || || ||||| |||| || | || | | || | | || | ||||| | Sbjct 1197643 GGAGTTCAAGCG-CAAGAACAAGAAGGACCTGACCGGCAACGCCCGTGCCCTCCGTCGTC 1197701 Query 349974 TAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTG 350033 | | || ||||| || ||||| ||||| || | || ||| | | || ||||| || | Sbjct 1197702 TCCGCACCGCGTGCGAGCGTGCCAAGCGCACCCTCTCGTCTGCCGCTCAGACCTCGATCG 1197761 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | || || || || || |||| || |||| | || || || ||||| || || | Sbjct 1197762 AGATCGACTCGCTCTTCGACGGCATCGACTTCTACACCTCCATCACTCGTGCCCGTTTCG 1197821 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGT 350145 | || | || ||| || || | | || ||||| || || || || || Sbjct 1197822 AGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGAGCCCGTCGAGAAGGT 1197873 >seq6 Length=2071177 Score = 113 bits (124), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || || ||||| ||||| ||||| || || || || || || || Sbjct 2048618 ACCTCCACGGAGACGGAGGACGAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGA 2048559 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || |||||||||||||| || || ||||| || || || Sbjct 2048558 GAGCGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGG 2048499 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688 || || || || ||||| || || ||| || ||||| || |||| || || | |||| Sbjct 2048498 GATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATCGTGTCGGACGACTCAA 2048440 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | ||||| || || || || || || || |||||||| Sbjct 2048439 CCTCCAGAGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 2048391 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 2048393 CATACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 2048334 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || || ||||| || || ||||| || || Sbjct 2048333 CGAGAGGGTCCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGG 2048274 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || ||||| | || || | || Sbjct 2048273 AGGAATCCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATAGTGTCCGAAGACTC 2048214 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || || |||||||| Sbjct 2048213 GACCTCAAGGGTGATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 2048163 >seq4 Length=2739924 Score = 84.2 bits (92), Expect = 7e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 1418332 ATACCACCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 1418391 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| || || Sbjct 1418392 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGG 1418451 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || || | || || | || Sbjct 1418452 GGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 1418511 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || || | ||||| ||||| || Sbjct 1418512 ACCTCGAGAGTGATGGTCTTACCGGTGAG 1418540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254050544454