Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 125 2e-23 seq4 123 6e-23 seq3 122 2e-22 seq12 120 7e-22 seq18 107 5e-18 seq10 102 2e-16 >seq6 Length=2071177 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || ||||| || || || |||| ||||| || | | || | || || Sbjct 2048602 AGGACGAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGTCCGTCC 2048543 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||||||||| || || |||||||| Sbjct 2048542 TCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 2048483 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| || | || || || | ||||||||| Sbjct 2048482 TGGATCTTGCTCTTCACATTGTCGATCGTGTCGGACGACTCAACCTCCAGAGTGATCGTC 2048423 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 2048422 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 2048391 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| || |||||||| || || || |||||||| ||||| || ||| Sbjct 2048043 CCATCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGAATTCCCTCC 2047984 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || ||||| ||| ||| ||||||||||| || | || || || | ||| Sbjct 2047983 TTGTCCTGAATCTTCGACTTAACATTGTCGATGGTGTCAGATGACTCGACCTCGAGGGTG 2047924 Query 225676 ATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 2047923 ATGGTCTTGCCGGT 2047910 >seq4 Length=2739924 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || |||| ||||| |||| | || | || || Sbjct 1418350 AGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1418409 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || || || |||||||| Sbjct 1418410 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 1418469 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| || || || | ||||| ||| Sbjct 1418470 TGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTC 1418529 Query 225682 TTGCCCGT 225689 || || || Sbjct 1418530 TTACCGGT 1418537 >seq3 Length=2964310 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | | || | || || Sbjct 1685825 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1685766 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || || || |||||||| Sbjct 1685765 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 1685706 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| |||| || || || | ||||| ||| Sbjct 1685705 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTC 1685646 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 1685645 TTGCCCGTCA 1685636 >seq12 Length=3812 Score = 120 bits (132), Expect = 7e-22 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| |||||||| || |||||||||||||| | | |||||| ||||||||||| Sbjct 3515 TTCAGGATGTCCAAAAAACCAAAATAAATGTTGATATAATACAGGATCTCCTCCGCCTGA 3574 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||| |||| |||||| ||||||||||||||||||| Sbjct 3575 AGGATCATAAAATGAAGTATTTAAATTTCTATCAGTTAAAA 3615 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | || ||| Sbjct 3693 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAAGAAAA 3752 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATC 371483 || ||||| |||| | || || |||||||| | |||||||||||| || |||||||| Sbjct 3753 TTAATAGCACCTAATAATGATGAAATACCTGCTAAATGTAAACTAAAAATAGCTAAATC 3811 >seq18 Length=1070 Score = 107 bits (118), Expect = 5e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 398 GAAAATTTGTCCATCTGTAATTGAAATAACATTAGTAGGAATATAAGCTGAAACGTCACC 339 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 |||||| ||||| | || ||||| || |||| || || ||||| | |||||||| Sbjct 338 TGCTTGAGTTTCAATAATTGGTAATGCAGTTAAAGAACCTCCACCTATTTTTTTATT 282 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || ||||| || ||||||| | |||| |||| |||||||||||||||||||||||| || Sbjct 81 GCACCATATACTGGTTGTGCTTTAGGTGAATTCTTTAGAGATAATGGTAAACATGCTGTA 140 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 141 ATTTTTTATGATGATTTATCTAAACAA 167 >seq10 Length=6790 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 4922 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 4863 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 4862 GTAACATGATGTATAGGGTCTGACAC 4837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530924972492