Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq7 100 4e-16 >seq2 Length=2999908 Score = 111 bits (122), Expect = 2e-19 Identities = 243/360 (68%), Gaps = 12/360 (3%) Strand=Plus/Minus Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 ||| ||||| ||||||| ||| || | ||||| || || ||||| || |||| || || Sbjct 2063362 ATGCAGACCCTCATCTCGACTGATGAGCTCGTTCGAGAAAGTGAGCCCCTGCATGAGACC 2063303 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 ||| || || |||||||| ||||||||||| || || || ||||| |||||||| || Sbjct 2063302 ACGCTTCTTCAGCCAAAAGATTGCCGCGAACGACCCGGAGAAGAAAATGCCTTCCACACA 2063243 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTT---CGTTGTGTA-TCCACCGTTG 48328 ||||| || | || | | |||| || | ||| ||| |||| | || | Sbjct 2063242 AGCAAACGCAATCAGAC-GTATCCGGAAGGGCACCTTGTCCGTGATGTACTTCATC---- 2063188 Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 ||||| || |||||||||| | ||||| || |||| || | || || || |||| Sbjct 2063187 -GCCCAGTCCGCCTTCTTCTGGATGCAAGGAATGTTTTCCATTCCTTTGAATAGGAAGTC 2063129 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 || || | |||| ||||| || || || || ||||| || |||||| || | Sbjct 2063128 CTTCTCGGCCTTGTCTTGGACGTACGTCTCAATCAACAGACTGTAGGTTTCGGCATGGAC 2063069 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 | || || |||| || | || || || |||||| | ||| || |||||||| Sbjct 2063068 TTGCTCGATCATGGTCTGGAACGCATAGAACGCTCGCGCTTCAGCGATTTGGACCTCCGT 2063009 >seq7 Length=1807069 Score = 100 bits (110), Expect = 4e-16 Identities = 140/195 (72%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| |||||||| || || || || |||||||| || || | |||| Sbjct 103959 TCGTTGGAGAACGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGACGCG 103900 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| ||||| || ||||| || || ||| | || | ||||||| | Sbjct 103899 AACGAGCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGATCAGACGCTCTCCGAAC 103840 Query 48303 CTGG----CTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 || ||| || | ||||| || | ||||| || ||||||||||| | || || Sbjct 103839 GAGGAGCGCTT-GTCGGAGATCCAGCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 103781 Query 48359 CATTGTTTCTATAGC 48373 || || || || || Sbjct 103780 GATGGTGTCGATGGC 103766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668643699520