Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20inkin_20[genbank_20GCA_5F001752625.1_202016-06-24] 18 sequences; 20,339,538 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 141 2e-28 seq6 138 3e-27 seq3 132 1e-25 >seq4 Length=2739924 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || ||||| |||||||| || ||| ||||||||||| |||||||| Sbjct 1418540 CTCACCGGTAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 1418481 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || ||||| || |||||||| || || ||||||||||| Sbjct 1418480 TCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGC 1418421 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || || | || || |||| || ||| |||| || || || || || Sbjct 1418420 AAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTC 1418361 Query 178122 CATCTTGT 178129 || ||||| Sbjct 1418360 CACCTTGT 1418353 >seq6 Length=2071177 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || || |||||||| ||||| || || ||| Sbjct 2048166 CAGATCTTCGTCAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGAC 2048225 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 2048226 ACTATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGGATTCCTCCCGACCAGCAG 2048285 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || ||| |||| || | || || ||| || Sbjct 2048286 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGGACCCTCTCGGACTACAACATC 2048345 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 2048346 CAGAAGGAGTCGACCCTCCACCTCGT 2048371 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAAC 177995 || || ||||| || || || |||||||||||||| || || ||||||||||| || Sbjct 2047901 AAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCATCTGACACCATCGACAAT 2047960 Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 || || |||||||||||||| || ||||| || || |||||||| || || |||||| Sbjct 2047961 GTTAAGTCGAAGATTCAGGACAAGGAGGGAATTCCCCCCGACCAGCAGCGCCTCATCTTC 2048020 Query 178056 GCCGGAAAACAGCTCGAAGATGG 178078 ||||| || ||||| || ||||| Sbjct 2048021 GCCGGCAAGCAGCTTGAGGATGG 2048043 >seq3 Length=2964310 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || || || || |||||||| ||||| || ||| ||||| ||||| |||||||| Sbjct 1685635 CTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAACGTCAAG 1685694 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || || |||||||| |||||||| || || ||||||||||| Sbjct 1685695 TCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCCGGC 1685754 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 || |||||||| || || | || ||| | || || ||| |||| || || || || || Sbjct 1685755 AAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTC 1685814 Query 178122 CATCTTGT 178129 || || || Sbjct 1685815 CACCTCGT 1685822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730922389492