Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 122 8e-23 seq13 114 1e-20 seq6 114 1e-20 seq3 109 5e-19 seq1 109 5e-19 seq4 93.3 4e-14 >seq10 Length=2164251 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||||||||| |||||| Sbjct 2138716 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCATCCTCGAGCTGCTTTCCA 2138657 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| ||||| || || ||||||||||| || || || Sbjct 2138656 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATCCCCTCCTTGTCCTGGATCTTCAACTTG 2138597 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||||| || | || ||||| |||||||| Sbjct 2138596 ACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTC 2138537 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 2138536 TTGACGAAGATCTGCAT 2138520 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 2138951 GTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTG 2138892 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | |||||||||||||| || ||||| |||||||||||||| ||| || Sbjct 2138891 CTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTT 2138832 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||||||||||| || | ||| || || || Sbjct 2138831 CGACTTCACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTACCCGT 2138772 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 2138771 GAGGGTCTTCACGAAGATCTGCAT 2138748 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||| ||||| || ||||| |||||||||||||||| ||||| || || |||||||| Sbjct 2138392 ATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGGATCCCCTCCTT 2138333 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| ||| || || || | || | |||||| | ||||||||||| ||| | Sbjct 2138332 GTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCGAGGGTGAT 2138273 Query 118703 CGTTTTGCCGGTCAGAGTTTT 118723 || |||||||| || || || Sbjct 2138272 GGTCTTGCCGGTGAGCGTCTT 2138252 >seq13 Length=1285846 Score = 114 bits (126), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| || ||||| ||||||| Sbjct 1260989 CAAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGA 1260930 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || |||||| |||||||||||||||| |||||||| ||||| |||||||| | Sbjct 1260929 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGA 1260870 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| |||||| | ||| ||||| | ||| | || |||| Sbjct 1260869 TCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCAAGGGTGATGGTCTTGC 1260810 Query 118711 CGGTCAGAGTTTT 118723 |||| || || || Sbjct 1260809 CGGTGAGGGTCTT 1260797 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||| || |||||||||||| Sbjct 1261213 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCCTCGAGCTG 1261154 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| | || || |||||||| || || || || ||||||||||| ||| || Sbjct 1261153 CTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTT 1261094 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||||| | ||| ||||| | || | ||| ||||| || Sbjct 1261093 GCTCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCAAGCGTGATCGTCTTGCCCGT 1261034 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 1261033 CAACGTCTTGACAAAGATCTGCAT 1261010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| | || || |||||| ||||| || || Sbjct 1261434 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCATCCTCCAGCTGCTTGCCG 1261375 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || || || || ||||||||||| || || || Sbjct 1261374 GCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 1261315 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| |||| | ||| ||||| | || | ||| || || || ||||| Sbjct 1261314 ACGTTGTCGATGGTATCCGAGGACTCAACCTCCAGAGTAATCGTCTTTCCAGTAAGAGTC 1261255 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 1261254 TTGACGAAGATCTGCAT 1261238 >seq6 Length=2834147 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | |||||| ||||||||||| Sbjct 1117935 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTG 1117876 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| ||||| || || ||||||||||| || || Sbjct 1117875 CTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTT 1117816 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||||| || | || || ||||| Sbjct 1117815 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTAATGGTCTTACCGGT 1117756 Query 118715 CAG 118717 || Sbjct 1117755 GAG 1117753 >seq3 Length=3240826 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 834972 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTG 835031 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| || ||||| || ||||||||||| || || Sbjct 835032 CTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 835091 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||||| || | || || ||||| Sbjct 835092 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTACCGGT 835151 Query 118715 CAG 118717 || Sbjct 835152 GAG 835154 >seq1 Length=3718887 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 1834111 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 1834052 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| ||||| || |||||||||||||| || || Sbjct 1834051 CTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 1833992 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||| | ||| | || ||||| || Sbjct 1833991 GGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1833932 Query 118715 CAG 118717 || Sbjct 1833931 GAG 1833929 >seq4 Length=3236612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118574 AGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 |||||| |||||||||||| || || ||| |||| || |||||||| ||||| || || Sbjct 326248 AGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGCGGGAT 326307 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 |||||||||||| || || ||||| | |||| ||||||| | ||||||||| Sbjct 326308 GCCCTCCTTGTCCTGGATCTTGGACTTAACGTTGTCGATCGTGTCCGAGGACTCGACCTC 326367 Query 118694 GACGGTCACCGTTTTGCCGGTCAG 118717 || || | || ||||| || || Sbjct 326368 GAGAGTAATGGTCTTGCCCGTAAG 326391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829786672272