Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16 122 1e-22 seq2 118 1e-21 >seq16 Length=836766 Score = 122 bits (134), Expect = 1e-22 Identities = 170/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||||||||||||||| | || | ||||| || |||||||| Sbjct 122587 CAGGCGAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGG 122528 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || || ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 122527 CCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 122468 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGC-TGTCATGT 33758 || || || || || || ||||| || || | ||| || | || ||| |||| Sbjct 122467 ATACCCTCGACGGCGGCGAAGGCGATGAGGCGCTCGCCGAACGACGACCGCTTGTCCGAG 122408 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 ||||| | ||||| ||||||||||| || | ||||| ||||| || || || Sbjct 122407 ATCCAGCGAAGCGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCGATAGC 122352 Score = 118 bits (130), Expect = 1e-21 Identities = 257/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||| |||||| ||||| || | ||| || | ||||| || || ||||| Sbjct 439940 ACAAGCGAAATCCGTGTGCAGGCCCTCATCGCGACTGATGAGCTCGTTGGAGAATGTGAG 439999 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || |||| || || ||||| || ||||| || || | |||||||||||||| ||||| Sbjct 440000 CCCTTGCATGAGCCCGCGCTTCTTCAGCCAGAAGATTGCGGCGAATGATCCGGAGAAGAA 440059 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG----CGCT-GTCA 33755 || || || || |||||| ||||| || | | ||| || || |||| || | Sbjct 440060 AATGCCCTCCACACAAGCAAACGCAATCAGGC-GTATCCGGAAAGGGACATCGCTGGTAA 440118 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||| |||| ||||| || |||||||| | | || || || | || || | Sbjct 440119 TGT----ACTTCATTGCCCAGTCTGCCTTCTTCTGGATGCAGGGGATGTTCTCCATCCCC 440174 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || || | | | ||| || | |||| || || || |||||||| ||||| || Sbjct 440175 TTGAACAAGAAATCTTTCTCTGCTTTGTCTTGGACGTAGGTTTCGATCAACAGACTGTAT 440234 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 |||| | |||| | ||| || |||| || ||||||| | ||||||| | Sbjct 440235 GTTTCGGCGTGAACCTGTTCGATCATAGTCTGGAAGGCGTAGAAGGCACGTGCCTCGGCA 440294 Query 33936 ATCTGCACTTCTGTA-CAAA 33954 ||||||||||| ||| |||| Sbjct 440295 ATCTGCACTTCCGTAGCAAA 440314 >seq2 Length=3385878 Score = 118 bits (130), Expect = 1e-21 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| ||||||||||| | || | ||||| || |||||||| Sbjct 2876892 CAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGG 2876833 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 2876832 CCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCTGAGAAGAAG 2876773 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33758 || || || || ||||| || || || || | ||| || | || || ||| Sbjct 2876772 ATACCCTCAACGGCAGCGAACGCGATGAGGCGCTCGCCGAACGAGGAGCGTTGGTCGGAA 2876713 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 |||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 2876712 ATCCACCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGC 2876657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816686764480