Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16 129 8e-25 seq2 118 2e-21 >seq16 Length=836766 Score = 129 bits (142), Expect = 8e-25 Identities = 278/411 (68%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||||||||||||| | || || ||||| || |||||||| Sbjct 122587 CAGGCGAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGG 122528 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| || || || ||||| |||||| Sbjct 122527 CCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 122468 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACTGGCGC-TGTCATGT 50136 || || || || ||||| ||||| | || | ||| || | || ||| |||| Sbjct 122467 ATACCCTCGACGGCGGCGAAGGCGATGAGGCGCTCGCCGAACGACGACCGCTTGTCCGAG 122408 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| ||||||||||| || | ||||| ||||| || || || | Sbjct 122407 ATCCAGCGAAGCGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCGATAGCCTGG 122348 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || || || | | || | || || ||||||| || ||| | Sbjct 122347 AACAGGTACTGACGGCGCGCGTTGTCGCGGATGTACGTGTCGATCAGGAGCGAGTACGTC 122288 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC-TAGCCTCGGTAAT 50315 ||||| || ||||| || || ||||| ||||||||| ||| || | ||||| | || Sbjct 122287 TCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAG-AACGTCTTGGCCTCAGAGAT 122229 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTC 50366 ||| || ||| || || || || | | || || || ||||| ||||| Sbjct 122228 CTGGACCTCTCCGCAGAAGCGCTCGACGAGGTTCTCGTTGACTATGCCGTC 122178 >seq2 Length=3385878 Score = 118 bits (130), Expect = 2e-21 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| ||||||||||| | || || |||||||| |||||||| Sbjct 2876892 CAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGG 2876833 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||| ||||| || ||||| || |||||||| || || || || |||||| Sbjct 2876832 CCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCTGAGAAGAAG 2876773 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGT 50136 || || || || || || || || | || | ||| || | || || ||| Sbjct 2876772 ATACCCTCAACGGCAGCGAACGCGATGAGGCGCTCGCCGAACGAGGAGCGTTGGTCGGAA 2876713 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 |||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 2876712 ATCCACCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGC 2876657 Score = 111 bits (122), Expect = 2e-19 Identities = 239/355 (67%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||||||||||||||| ||| || || || || || || || || || |||| || || Sbjct 3154663 GTGCAGACCCTCGTCTCGACTGATGAGCTCATTCGAGAAGGTCAGGCCTTGCATGAGACC 3154722 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || || | |||||| ||||| || || ||||| || || || Sbjct 3154723 ACGCTTCTTCAGCCAGAAGATCGCCGCAAACGACCCCGAGAAAAAGATGCCCTCCACACA 3154782 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT-GTCATGTATCCACTTTTGAGCCC 50152 |||||| |||| | | | ||| || | || ||| || |||| |||| Sbjct 3154783 GGCAAACGCAATCAAAC-GTATCCGGAAAGGCACCTCGTCGGTAATGTACTTCATCGCCC 3154841 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212 | || |||||||||| | || || || | || || | || || ||| ||| || | Sbjct 3154842 AGTCTGCCTTCTTTTGGATGCAGGGGATGTTCTCCATTCCTTTGAACAGAAAGTCCTTCT 3154901 Query 50213 CATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTT 50272 | | |||| || || || |||||||| ||||| ||| |||| | |||| | | Sbjct 3154902 CGGCCTTGTCTTGGACGTAGGTCTCGATCAACAGACTGTACGTTTCGGCGTGAACTTGCT 3154961 Query 50273 CAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327 | || |||| || ||||||| || || |||| |||||| || ||||| Sbjct 3154962 CGATCATGGTCTGGAAGGCGTAGAAGGCTCGCGCTTCGGCAATCTGGACCTCTGT 3155016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267758510240