Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq16 226 4e-54 seq8 149 9e-31 seq7 116 5e-21 >seq2 Length=3385878 Score = 230 bits (254), Expect = 3e-55 Identities = 561/842 (67%), Gaps = 25/842 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| | |||||||| ||||||||||| || || ||||| | ||| ||| || | || Sbjct 2876336 ATTTGGCAGATGTACAAGAAGGCTCAGGCTTCGTTCTGGACCGCCGAGGAGATCAACCTC 2876395 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| |||| ||||| | ||| || | |||||| || || | Sbjct 2876396 GCCCCCGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCTTCTTCATCGAG 2876455 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | || ||||| |||| || ||||| ||||||||||| || || || || Sbjct 2876456 CACGTCCTCGCGTTCTTCGCCGCGTCGGATGGCATCGTCAACGAAAACCTCGTGGAGCGC 2876515 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 |||| ||| | || | |||| | || ||||| ||||| |||||||| Sbjct 2876516 TTCTGCGGCGAGGTCCAGATCTCCGAGGCCAAGACGTTCTACGGTTTCCAGATCATGATG 2876575 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-CGCA 125317 |||||| | || ||||| | |||||| || || |||| |||||| ||||| ||| Sbjct 2876576 GAGAACATCCATTCGGAGACGTACTCGCTCCTCATCGACACGTACATCCGCGACAACGCG 2876635 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || || | || || | || |||||||| | || | || || ||||| | Sbjct 2876636 -CGCCGCCAGTTCCTGTTCCAGGCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGA 2876694 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | |||||||| ||| | || |||| || ||| | || | || || Sbjct 2876695 CTGGGCCCTGCGGTGGATTTCCGACCAACGCTCCTCGTTCGGCGAGCGCCTCATCGCGTT 2876754 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 ||| ||||| ||||| |||||||| || || || ||| ||||||| ||||| ||||| Sbjct 2876755 CGCTGCCGTTGAGGGTATCTTCTTCTCAGGCTCGTTCGCGTCCATCTTCTGGCTGAAGAA 2876814 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 |||||| ||||||||||| || ||| | |||||| | || || || |||||||| || Sbjct 2876815 GCGCGGCCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCT 2876874 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617 ||| ||||| ||| || || || || | | || || || || | | || | Sbjct 2876875 CCACACCGACTTCGCCTGCCTGCTCTT---CACCCACCTCCG-CCGCCGTCCCCACCCGG 2876930 Query 125618 ---CGATGAA-AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTC 125673 |||| || ||| ||||||| || ||||| | ||| || || ||||| | Sbjct 2876931 ACACGATCAACAAGATCATCAA---------GGAGGCCGTCAAGATTGAGCAGGAGTTCC 2876981 Query 125674 TAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACA 125733 | ||||| |||| ||||| | || ||||||||| |||||| |||||| |||||| Sbjct 2876982 TCACCGAGGCCCTCCCGGTGTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAGTACA 2877041 Query 125734 TAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACG 125790 | ||||| || || || ||||| || || ||||| || |||||| | ||| Sbjct 2877042 TCGAGTTCGTCGCCGACCGTCTCCT---CGTCGCCCTTGGCAACGACAAGATCTGGAACT 2877098 Query 125791 CCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCG 125850 | || ||||| || |||||| | || || || | || ||| ||||||| |||| Sbjct 2877099 CGGCCAACCCCTTCGACTTCATGGAGATGATCTCGCTGCAAGGCAAGGCCAACTTCTTCG 2877158 Query 125851 AG 125852 || Sbjct 2877159 AG 2877160 Score = 136 bits (150), Expect = 6e-27 Identities = 317/473 (67%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| || || || ||||| || || | ||| ||||| | || ||| Sbjct 568181 CGTTACGTTGACCAGGGTGGTAACAAGCGGCCCGGTGCCTTCGCCATCTACCTTGAGCCT 568240 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| ||| | |||||||| |||| | || || ||| || ||||||| Sbjct 568241 TGGCACGCCGACATCTTTGACTTCCTCGACCTCCGTAAGAACCACGGGAAGGAAGAGGTC 568300 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| | || || || |||||| | | || ||||||||||||| ||| | Sbjct 568301 CGTGCGCGTGACCTTTTCTACGCCCTCTGGATCTCCGACCTGTTCATGAAGCGTGTCGAG 568360 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| |||||| ||| |||||||| | || ||||| || || ||| Sbjct 568361 TCCGACGGCGACTGGACCCTCATGTGCCCTGCTGAGTGCCCCGGCCTCTCTGATGTACAC 568420 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162 || ||||| ||| ||| | |||||||| | ||| | || |||| Sbjct 568421 TCTGAGGAGTTCGAGCAGCTGTATGAGAGCTACGAGCGCGCCGGCAAGGGTCGCAAGACC 568480 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| |||||| |||||| || ||| ||| ||||| || | Sbjct 568481 A-TCAAGGC-CCAGAAGCTGTGGTTCGCCATCTTGGAGGCGCAGACTGAGACCGGTGGCC 568538 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| ||||||||||| ||| ||| ||||| ||||||| ||| | ||||| | Sbjct 568539 CCTTCATGCTCTACAAGGACGCCGCGAACCGCAAGTCGAACCAACAGCACCTCGGCACTA 568598 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| ||||| || ||||| || || | |||||| | || || || ||| Sbjct 568599 TCAAGTCATCCAACCTCTGCACTGAGATCATCGAGTACTCTTCGCCCGATGAG 568651 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || ||||||||||| || ||||| |||||||| ||||| ||||| |||||||| || Sbjct 3154779 GTGGAGGGCATCTTTTTCTCGGGGTCGTTTGCGGCGATCTTCTGGCTGAAGAAGCGTGGT 3154720 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGT 125564 ||||||| || ||||| | || ||| | || |||||||||||| || ||| Sbjct 3154719 CTCATGCAAGGCCTGACCTTCTCGAATGAGCTCATCAGTCGAGACGAGGGTCTGCACACG 3154660 Query 125565 GACTTTGC 125572 |||||||| Sbjct 3154659 GACTTTGC 3154652 >seq16 Length=836766 Score = 226 bits (250), Expect = 4e-54 Identities = 500/744 (67%), Gaps = 17/744 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||||||||| || || ||||| | || ||| || | || Sbjct 122031 ATCTGGCAGATGTACAAGAAGGCTCAGGCTTCGTTCTGGACTGCTGAGGAGATCAACCTC 122090 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 | ||||| |||| ||||| | ||| || | ||||| || || | Sbjct 122091 GCGCCCGACCTCCACGACTGGGACAACAAGCTGAACGACAACGAGCGCTTCTTCATCGAG 122150 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || || || || |||||||| || || || || || Sbjct 122151 CACGTCCTTGCTTTCTTCGCCGCGTCGGACGGCATAGTCAACGAGAACCTCGTCGAG-CG 122209 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 |||| |||| | || | |||| | || ||||||||||| |||||||| Sbjct 122210 CTTCTGCGGAGAGGTCCAGATCTCTGAGGCCAAGACGTTCTACGGATTCCAGATCATGAT 122269 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314 |||||| | |||||||| | |||||| ||||| |||| |||||| ||||| | Sbjct 122270 GGAGAACATCCACTCGGAGACGTACTCGCTCCTGATCGACACGTACATCCGCGACAACGC 122329 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || ||| | || || || | || ||||||||| | || | || || ||||| Sbjct 122330 GCGCCGTCAGTACCTGTTCC---AGGCTATCGACACGATCCCTTGCATCAAGAAGAAGGC 122386 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | |||| |||||| ||| | ||| |||| || ||| | || | || Sbjct 122387 CGACTGGGCGCTTCGCTGGATCTCGGACAAGCGGTCGTCGTTCGGCGAGCGCCTCATCGC 122446 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 ||||||||||| ||||| |||||||| || || || || ||||||| ||||| || Sbjct 122447 CTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTCTGGCTGAA 122506 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||||||| ||||||||||| || ||| | |||||| | || || || |||||||| Sbjct 122507 GAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCGAACGAGCTCATCTCGCGCGACGAGGG 122566 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATC 125614 || ||| ||||| ||| || || || || | || || ||| || | | Sbjct 122567 TCTGCACACCGACTTCGCCTGCCTGCTCTT---CACGCACCTCCG--CCGCCGGCCGCAC 122621 Query 125615 CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCT 125674 | | || | | ||| ||| || | | || || || | ||| || || ||||| || Sbjct 122622 CCG----GACACGATCAACAAGATCATCAAGGAGGCGGTCAAGATCGAGCAGGAGTTCCT 122677 Query 125675 AACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 ||||| |||| || ||| | || ||||||||| |||||| |||||| ||||||| Sbjct 122678 GACCGAGGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAGTACAT 122737 Query 125735 AGAGTTTGTGGCAGATCGTCTACT 125758 ||||| || || || || || || Sbjct 122738 TGAGTTCGTCGCCGACCGCCTCCT 122761 >seq8 Length=2605587 Score = 149 bits (164), Expect = 9e-31 Identities = 325/479 (68%), Gaps = 16/479 (3%) Strand=Plus/Plus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || |||||| ||||| ||||| || || || ||||| | ||| ||||| | || || Sbjct 1314494 CGTTACGTTGACCAGGGAGGCAACAAGCGCCCCGGCGCCTTTGCCATCTACCTTGAGCCC 1314553 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| ||| | || ||||| | || | || || ||| || || |||| Sbjct 1314554 TGGCACGCCGACATCTTCGACTTCCTTGACCTCCGTAAGAACCACGGAAAGGAGGAGGTC 1314613 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || || | ||| |||| || || |||||| | | ||| | ||||||||||| ||| | Sbjct 1314614 CGTGCTCGTGACCTGTTCTACGCCCTCTGGATCTCCGATCTCTTCATGAAGCGTGTCGAG 1314673 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTC---CGATTGC 97100 | ||| |||||| || |||||||||| || || ||||| || || | | Sbjct 1314674 TCTGACGGCGACTGGACTCTCATGTGCCCCGCTGAGTGCCCTGGTCTCTCGGACGTTCAC 1314733 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAG-AGGGCCGATACGT 97156 | ||| ||||| ||| ||| ||||| ||||||| | | ||| | |||| Sbjct 1314734 T---CCGAGGAGTTCGAG---AAGCTCTACACCAGCTACGAGAAGGCAGGTAAGGGACGT 1314787 Query 97157 GAGACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTG 97215 |||||| || | || | |||| || ||| |||||| | ||| ||| ||||| | Sbjct 1314788 AAGACGA-TCAAGGC-CCAGAAGCTCTGGTTCGCCATCTTAGAGGCCCAGACTGAGACCG 1314845 Query 97216 GAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGG 97275 | ||| | ||| ||||||||||| | | || ||||| ||||| | ||| | | Sbjct 1314846 GCGGTCCCTTCATGCTCTACAAGGACGCGGCCAACCGCAAGTCGAACCAGCAGCACCTCG 1314905 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||||||||| |||||| |||||||| || || | |||||| ||||||| || ||| Sbjct 1314906 GCACCATCAAGTCCTCCAACCTGTGCACTGAGATCATCGAGTACTCCTCTCCTGATGAG 1314964 >seq7 Length=2824449 Score = 116 bits (128), Expect = 5e-21 Identities = 401/615 (65%), Gaps = 24/615 (4%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||||| ||||| || || || | ||| |||||||| || || ||||| Sbjct 1942199 TTGCGGAAGAAGATGAGACCGGCGCGGGGGCCACGGAGGGTCTTGTGGGTCGTGGTGGTG 1942140 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGC--CCGCAATCAAGCCCGCA- 127218 || | |||||| || || ||||| | || || || || | |||| |||| ||| | Sbjct 1942139 ACGACGTCACAGTAGTCGAAGGG-CGAGTTCTG-CTCGGCGGCAGCAA-CAAGACCGGAG 1942083 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCAT--CGGCAATCTCTCGGAATC 127276 ||||| || || |||| |||||| ||| ||| |||| | |||| ||||| |||| || Sbjct 1942082 ATGTGGGCCATGTCGGACATCAGGTAGGCGCC--CTGCTTGTCGGCGATCTCGCGGA-TC 1942026 Query 127277 GTCTA-TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTG 127335 ||| |||||| || || || ||| | ||| | || || | || ||| Sbjct 1942025 TTCTTGTAGTCCCAGTCACGGGGGTAGGCGGAGCCACCGCAGACGACGAGACGGGGCTTG 1941966 Query 127336 AATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACC 127395 || | || || | || || | | ||||||||| || ||||| || || || Sbjct 1941965 AAGATGTTAGCGTTGGTGGACAGCTGCTCGTAGTCGACGTAGCCGGTCTGGGGGTCGACA 1941906 Query 127396 TTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT-------GCGGAAT-- 127446 |||||| | | ||| ||| || | |||| | || |||| | Sbjct 1941905 CGGTACGGGAACGACTGGAAGTAGATCGACGACGCGGTGATCTTCTTCTTGGCGGTGTAG 1941846 Query 127447 ---CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 ||||| || ||||| || |||||||| || | || ||||||| | | || || Sbjct 1941845 TAGCCGTGAGTGAGGTGTCCACCGTCGGGGAGGCCAAGACCCATGACGCGGTCCTGGGGG 1941786 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 || | | | ||| || ||||||||||||| ||||||| ||||| || || || Sbjct 1941785 TTGATCAGAGCGGTGAACGCGGCAAAGTTGGCGGTCGAGCCGGAGTAGGGCTGAACGTTG 1941726 Query 127564 ACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGT 127623 || ||||| | ||| || || ||||| || |||| |||| | | || Sbjct 1941725 ACGCCCCACTTGGAGGGGTCCAGGTTGAAGGCCTTGAGGGCACGCTCGCGGGTGAGGTTC 1941666 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 |||| | || || |||||||||| || ||||| || ||||| |||||||||| Sbjct 1941665 TCGAGCTGGTCAATGTACTCGTTACCGCCGTAGTAGCGGGCACCGGGGAGACCCTCCGAG 1941606 Query 127684 TACTTGTTGATGAGA 127698 ||||||||| ||||| Sbjct 1941605 TACTTGTTGGTGAGA 1941591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058125464160