Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq16 132 6e-26 seq2 127 3e-24 >seq16 Length=836766 Score = 132 bits (146), Expect = 6e-26 Identities = 279/411 (68%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||||||||||||| | || || ||||| || |||||||| Sbjct 122587 CAGGCGAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGG 122528 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct 122527 CCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAG 122468 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGC-TGTCATGT 33480 || || || || || || ||||| || || | ||| || | || ||| |||| Sbjct 122467 ATACCCTCGACGGCGGCGAAGGCGATGAGGCGCTCGCCGAACGACGACCGCTTGTCCGAG 122408 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| ||||||||||| || | ||||| ||||| || || || | Sbjct 122407 ATCCAGCGAAGCGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATCGTGTCGATAGCCTGG 122348 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || || | | || | || || ||||||| || ||| | Sbjct 122347 AACAGGTACTGACGGCGCGCGTTGTCGCGGATGTACGTGTCGATCAGGAGCGAGTACGTC 122288 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC-TAGCCTCGGTAAT 33659 ||||| || ||||| || || ||||| ||||||||| ||| || | ||||| | || Sbjct 122287 TCCGAGTGGATGTTCTCCATCATGATCTGGAATCCGTAG-AACGTCTTGGCCTCAGAGAT 122229 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||| || ||| || || || || | | || || || ||||| ||||| Sbjct 122228 CTGGACCTCTCCGCAGAAGCGCTCGACGAGGTTCTCGTTGACTATGCCGTC 122178 Score = 118 bits (130), Expect = 1e-21 Identities = 257/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| |||||||| |||||| ||||| || | ||| || || |||||||| || ||||| Sbjct 439940 ACAAGCGAAATCCGTGTGCAGGCCCTCATCGCGACTGATGAGCTCGTTGGAGAATGTGAG 439999 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || |||| || || ||||| || ||||| || || | ||||||||||| || ||||| Sbjct 440000 CCCTTGCATGAGCCCGCGCTTCTTCAGCCAGAAGATTGCGGCGAATGATCCGGAGAAGAA 440059 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG----CGCT-GTCA 33477 || || || || |||||| ||||| || | | ||| || || |||| || | Sbjct 440060 AATGCCCTCCACACAAGCAAACGCAATCAGGC-GTATCCGGAAAGGGACATCGCTGGTAA 440118 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 ||| |||| ||||| || |||||||| | | || || || | || || | Sbjct 440119 TGT----ACTTCATTGCCCAGTCTGCCTTCTTCTGGATGCAGGGGATGTTCTCCATCCCC 440174 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || || | | | ||| || | |||| || || || |||||||| ||||| || Sbjct 440175 TTGAACAAGAAATCTTTCTCTGCTTTGTCTTGGACGTAGGTTTCGATCAACAGACTGTAT 440234 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 |||| | |||| | ||| || |||| || ||||||| | ||||||| | Sbjct 440235 GTTTCGGCGTGAACCTGTTCGATCATAGTCTGGAAGGCGTAGAAGGCACGTGCCTCGGCA 440294 Query 33658 ATCTGTACTTCTGTA-CAAA 33676 ||||| ||||| ||| |||| Sbjct 440295 ATCTGCACTTCCGTAGCAAA 440314 >seq2 Length=3385878 Score = 127 bits (140), Expect = 3e-24 Identities = 170/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||| ||||||||||| | || || |||||||| |||||||| Sbjct 2876892 CAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGG 2876833 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||||| || || || |||||| Sbjct 2876832 CCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCTGAGAAGAAG 2876773 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGT 33480 || || || || ||||| || || || || | ||| || | || || ||| Sbjct 2876772 ATACCCTCAACGGCAGCGAACGCGATGAGGCGCTCGCCGAACGAGGAGCGTTGGTCGGAA 2876713 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||| | ||||| ||||||||||| || | || || || || || ||||| Sbjct 2876712 ATCCACCGCAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGC 2876657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946296726560