Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13 140 3e-28 seq3 132 5e-26 seq10 131 2e-25 seq6 129 6e-25 seq1 114 1e-20 seq16 111 1e-19 seq2 100 3e-16 >seq13 Length=1285846 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | ||||||||||| || |||||||| ||| | Sbjct 1261008 CCACCGCGGAGACGAAGAACAAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1260949 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| |||||| Sbjct 1260948 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 1260889 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||||| | || | || |||| ||||| | Sbjct 1260888 ATGCCTTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTCAACC 1260829 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTT 131219 || | ||| | ||| || ||||| || || || Sbjct 1260828 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTT 1260797 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | || | || |||||||| || ||||||||||| Sbjct 1261464 CCTCCACGCAGACGAAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGAG 1261405 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| | || | |||||||||||||| || Sbjct 1261404 AGGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 1261345 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||||| | |||||| | Sbjct 1261344 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGACTCAACC 1261285 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || ||||| || ||||| |||||||| Sbjct 1261284 TCCAGAGTAATCGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 1261238 >seq3 Length=3240826 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 834949 CCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 835008 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| |||||| Sbjct 835009 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGG 835068 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | |||||||| Sbjct 835069 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 835128 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| || | ||| |||||||| || Sbjct 835129 TCGAGAGTGATGGTCTTACCGGTGAG 835154 >seq10 Length=2164251 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | ||| | ||||||||||| || |||||||| ||| Sbjct 2138746 CCACCGCGGAGACGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2138687 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 2138686 AGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 2138627 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || |||| ||||||| Sbjct 2138626 ATCCCCTCCTTGTCCTGGATCTTCAACTTGACATTGTCGATCGTGTCGGACGACTCGACC 2138567 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || ||||| || ||||| |||||||| Sbjct 2138566 TCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 2138520 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| || | |||||| |||||| |||||||| || Sbjct 2138944 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCA 2138885 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||| ||||| || || || ||||| || ||| ||| Sbjct 2138884 GCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTC 2138825 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| |||| || | || ||||| || || || Sbjct 2138824 ACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTCTTACCCGTGAGGGTC 2138765 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 2138764 TTCACGAAGATCTGCAT 2138748 >seq6 Length=2834147 Score = 129 bits (142), Expect = 6e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 1117958 CCACCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAA 1117899 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 1117898 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 1117839 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | |||||||| Sbjct 1117838 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1117779 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| |||| ||| |||||||| || Sbjct 1117778 TCGAGAGTAATGGTCTTACCGGTGAG 1117753 >seq1 Length=3718887 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | |||||||||||| || |||||||| || Sbjct 1834134 CCACCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1834075 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 1834074 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 1834015 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||||| Sbjct 1834014 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1833955 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 || | ||| | ||| || || || || Sbjct 1833954 TCAAGGGTGATGGTCTTGCCCGTGAG 1833929 >seq16 Length=836766 Score = 111 bits (122), Expect = 1e-19 Identities = 234/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 |||| |||||| | | ||||| || || ||||| |||| || |||||| || Sbjct 122427 TTCGGCGAGCGCCTCATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTC 122486 Query 46207 GCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 ||| ||||||| | | || || | || | ||||||||||||| ||||| ||||| Sbjct 122487 GCCTCCATCTTCTGGCTGAAGAAGCGCGGTC-TCATGCCCGGCCTCACGTTCTCGAACGA 122545 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 ||| || |||||||||||||| ||||| || ||||| || || || || ||| | Sbjct 122546 GCTCATCTCGCGCGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCT---TCACGCA 122602 Query 46326 CGTGCACGACAAGCTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCA 46384 | | | | | || || ||| ||||| | | || ||||||||||||| | Sbjct 122603 CCTCCGCCGCCGGC-CGCACCCGGACACGATCAACAAGATCATCAAGGAGGCGGTCAAGA 122661 Query 46385 TTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGT 46444 | ||| ||||||| | || | || || |||| | || | ||||||||||| || Sbjct 122662 TCGAGCAGGAGTTCCTGACCGAGGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCAAGC 122721 Query 46445 CAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT 46487 |||||| | ||||| ||||| || || ||||| || ||||| Sbjct 122722 TCATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTCCTCGT 122764 >seq2 Length=3385878 Score = 100 bits (110), Expect = 3e-16 Identities = 233/344 (68%), Gaps = 12/344 (3%) Strand=Plus/Minus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGC-AGCACCGCGACTTTCGCCGAG-C 46156 ||||| | |||||||||||||||| || | | | || | | ||||| | || | Sbjct 3154854 AAGAAGGCAGACTGGGCGATGAAGTACATTACCGACGAG----GTGCCTTTC-CGGATAC 3154800 Query 46157 GTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCT 46216 || || | || ||||| |||||||||| ||||||| || || ||||| || |||| Sbjct 3154799 GTTTGATTGCGTTTGCCTGTGTGGAGGGCATCTTTTTCTCGGGGTCGTTTGCGGCGATCT 3154740 Query 46217 TTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCG 46275 | | | || || | || | |||||| |||||||| || || ||||| || Sbjct 3154739 TCTGGCTGAAGAAGCGTGGTC-TCATGCAAGGCCTGACCTTCTCGAATGAGCTCATCAGT 3154681 Query 46276 CGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGAC 46335 || |||||||| ||||| ||||||||||| ||||| ||| || || | | | || Sbjct 3154680 CGAGACGAGGGTCTGCACACGGACTTTGCTTGTCTTCTCTA---CAGTCACCTCAGCCAC 3154624 Query 46336 AAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAG 46395 ||| ||| || |||| ||| |||||||| | | | ||||||||||||| Sbjct 3154623 AAGTGCTCGCAGGAGGAAGTGCATGCCATTGTCAAGGAGTCTCTCGACATTGAGAAGGAG 3154564 Query 46396 TTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 || || || | ||| ||||| ||| || | ||||| ||||| Sbjct 3154563 TTCTTGACTGACGCGCTGCCGTGTGCTTTGATCGGCATCAACGC 3154520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012115581440