Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 107 4e-18 seq2 104 5e-17 seq16 102 2e-16 >seq3 Length=3240826 Score = 107 bits (118), Expect = 4e-18 Identities = 244/359 (68%), Gaps = 16/359 (4%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 |||||||| || || ||||| || ||||||||||||||| | | || |||||| || Sbjct 2992270 GTGAAAATGTAACGAGCACTGGCAGCATCCTTACCACCCTGGAGACGCGTACCGAATTGA 2992211 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || | || | | ||||| ||| ||||||||||| | | ||||||||| | || Sbjct 2992210 CCGTTGGGTGCGAGCAGGTTGAGGTTGTTGCTTCCGACGAAGTTCTGTGCAAGACTGACA 2992151 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGAT-AGGCGCTATGCTCTGCA--ACGTAA 297613 |||||| | ||||||| |||||| ||||| | || ||| | ||| || ||| || Sbjct 2992150 ATGGTCGAGTACAGAGATTGTTCGCCGTGGTGGTAAGCCGC---GTTCTCCATCACGAAA 2992094 Query 297614 CCGCTGAACTG-TGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATAT 297672 ||| || ||| ||| ||||| | | | || || || |||||| || | | Sbjct 2992093 CCGACGACCTGCTGC-ACCTTGATCTGGTTCTTCGGCTTTTTCTTGAAGAGGGAGAAGAC 2992035 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATC 297732 || || || ||| || |||| || || | ||||| |||||| || | | Sbjct 2992034 GACCTTACGCTGACCCGGCTTGAGTCCGTCTGCAACCGAGGGAATGGAACG---GATGTT 2991978 Query 297733 GTACCGC----GAGAACAAAATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAACCTCG 297787 || | || |||||||| || |||||||||| || ||||||||||| ||| | |||| Sbjct 2991977 GT-CAGCCATGGAGAACAAGATGAGTTCCTTGTTGACGAAGTCGGGAATGGGGATCTCG 2991920 Score = 84.2 bits (92), Expect = 5e-11 Identities = 181/270 (67%), Gaps = 3/270 (1%) Strand=Plus/Plus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 ||||| |||||||| ||| || || || ||| | ||||| || | ||||| Sbjct 1566217 CTTCTCCACGAACTTGGAGAGGTTACCGGGGTAGTAGACAAGCTTC---TTCTGCTCGTA 1566273 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 ||||| || ||| || || ||||||||| ||||||||||| ||||| |||| ||| Sbjct 1566274 GTGGATGATGTCGGTACAGACGTTGTCGAGGAATCCGGAGTCGTGCGACACGATCATGCA 1566333 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 | | | ||| |||||| | ||||| || ||||| ||| | || | Sbjct 1566334 GGTGATGCCCTGGAGGTTGTTGAGGTAGTCCTCGAGCCAGGCGACGGTCTGAACGTCCAA 1566393 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 |||||||| ||||| || || || || | | | || | |||||| |||| ||||| Sbjct 1566394 GTGGTTGGTAGGCTCATCGAGCAGGAGGATGTCGGGCTTGACGAGCATACCACGGGCAAG 1566453 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 |||| ||||| ||||| || || || || Sbjct 1566454 CTCGAGCTTCATCTTCCAACCACCGGAGAG 1566483 >seq2 Length=3385878 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | | |||||| | ||||||||||| ||||| |||||||| | Sbjct 2877004 GCTCATCGGCATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCT 2877063 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||| ||||| | || || | | ||||| |||||||| | ||| ||||| Sbjct 2877064 CCTCGTCGCCCTTGGCAACGACAAGATCTGGAACTCGGCCAACCCCTTCGACTTCATGGA 2877123 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | | || ||||| ||||| || | ||||||||||| |||||| Sbjct 2877124 GATGATCTCGCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGTGT 2877168 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||||||| |||||||| ||||||||| || | ||||||| || ||||| || Sbjct 3154476 ATGTGTCAGTACATGGAATTCGTGGCCGACCGCCTTGTGGTCGCGCTCGGATATGACAAG 3154417 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | || | | || ||||| || | | ||||||||||| || || ||||| || || Sbjct 3154416 ATCTATCATGCGAAAAACCCGTTCGATTGGATGGAGCTCATCTCTCTCCAAGGCAAGGCT 3154357 Query 243706 AACTTCTTCGA 243716 || |||||||| Sbjct 3154356 AATTTCTTCGA 3154346 >seq16 Length=836766 Score = 102 bits (112), Expect = 2e-16 Identities = 281/431 (65%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||| ||| |||||| | ||| || ||||| | || || || ||| | || Sbjct 122433 GAGCGCCTCATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCC 122492 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| |||||| ||| ||| | ||||| |||||| | || |||||| ||||| Sbjct 122493 ATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCGAACGAGCTCATC 122552 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 ||||||||||| || ||| | |||| || | | | | |||| | Sbjct 122553 TCGCGCGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCACGCACCTCCGCCGC 122612 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 || | || ||| |||| | ||||||| || || || | | ||| |||| Sbjct 122613 CGGCCGCACCCGGACACGATCAACAAGATCATCAAGGAGGCGGTCAAGATCGAGCAGGAG 122672 Query 243535 TTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAG 243594 ||| | ||| || | || | ||| || ||||||||| | | |||||| | ||| Sbjct 122673 TTCCTGACCGAGGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCAAGCTCATGTGCCAG 122732 Query 243595 TACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAAC 243654 ||||| || ||||| ||||||||| | || |||| || || | || || | | ||| Sbjct 122733 TACATTGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGACAAGCTCTGGAAC 122792 Query 243655 TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTC 243714 || |||||||| | ||| |||||| | || ||||| || || || | ||||||||| Sbjct 122793 TCGTCCAACCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGGCCAACTTCTTC 122852 Query 243715 GAAAAGCGTGT 243725 || |||||| Sbjct 122853 GAGTCGCGTGT 122863 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | |||||||| ||||| || || || ||| | || |||||||||| || || || Sbjct 439769 ATGTGCCAGTACATGGAATTTGTGGCTGATCGCCTGGTCGTCGCGCTTGGCTACGACAAG 439710 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 | || |||| | ||| || |||| || ||||||||||| || |||||||| ||| | Sbjct 439709 ATCTATCACTCGAGGAATCCGTTTGACTGGATGGAGCTCATCTCCCTTCAAGGCAAAGCC 439650 Query 243706 AACTTCTTCGAAAAGCGTGT 243725 ||||| |||||| ||||| Sbjct 439649 AACTTTTTCGAATCTCGTGT 439630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102878360844600