Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13 105 7e-18 seq10 98.7 1e-15 seq1 89.7 5e-13 seq3 87.8 2e-12 seq6 82.4 8e-11 >seq13 Length=1285846 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || ||||| | |||||| || || || |||||||| || | Sbjct 1261008 CCACCGCGGAGACGAAGAACAAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1260949 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||| || | ||||| ||||||||||||||||| Sbjct 1260948 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 1260889 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || || || Sbjct 1260888 ATGCCTTCCTTGTCCTGGATCTT 1260866 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || || || | || || || || || ||||||||||| | Sbjct 1261465 ACCTCCACGCAGACGAAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGA 1261406 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | || || |||||||||||||| |||| || ||||||||||| || || Sbjct 1261405 GAGGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGG 1261346 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | ||||| || || || Sbjct 1261345 AATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGACTCAAC 1261286 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || || | ||| || ||||| || ||||| Sbjct 1261285 CTCCAGAGTAATCGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 1261238 >seq10 Length=2164251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || |||||||| || | || ||||| | || Sbjct 2138731 AGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGTCCATCC 2138672 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || |||||||||||||| || || || || || || Sbjct 2138671 TCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATCCCCTCCTTGTCC 2138612 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | ||| | |||| Sbjct 2138611 TGGATCTTCAACTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 2138552 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 2138551 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 2138520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | |||||| || || || |||||||| || | || |||||| |||| Sbjct 2138959 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2138900 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || ||||||| ||||||||||| |||||||| || || || || Sbjct 2138899 TCGAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2138840 Query 64352 TGTATTTT 64359 || || || Sbjct 2138839 TGAATCTT 2138832 >seq1 Length=3718887 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || || || | ||||| || || || |||||||| || | Sbjct 1834135 ACCACCACGCAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1834076 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 1834075 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGG 1834016 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 1834015 GATGCCCTCCTTGTCCTGGATCTT 1833992 >seq3 Length=3240826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| |||| || |||||||||||| Sbjct 834979 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 835038 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||| ||||||||||| ||||| || || || || || || || || Sbjct 835039 GCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTT 835091 >seq6 Length=2834147 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| |||| || |||||||||||| Sbjct 1117928 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 1117869 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||| |||||||||||||| || || || || || || || || || Sbjct 1117868 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTT 1117816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644075515040