Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq16 127 3e-24 >seq2 Length=3385878 Score = 150 bits (166), Expect = 2e-31 Identities = 356/527 (68%), Gaps = 13/527 (2%) Strand=Plus/Minus Query 116751 CTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCG 116810 ||| || ||||||||||| ||||| | ||||||||| || |||| || || || || Sbjct 568360 CTCGACACGCTTCATGAACAGGTCGGAGATCCAGAGGGCGTAGAAAAGGTCACGCGCACG 568301 Query 116811 AGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCA 116870 | ||||| | ||| || || ||| | || | ||||| | ||| || |||||||| Sbjct 568300 GACCTCTTCCTTCCCGTGGTTCTTACGGAGGTCGAGGAAGTCAAAGATGTCGGCGTGCCA 568241 Query 116871 CGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC----GACCAGCCTGGTTTACATACC 116926 || || ||||| | |||| | | || || | |||| |||||| || || | Sbjct 568240 AGGCTCAAGGTAGATGGCGA-AGGCACCGGGCCGCTTGTTACCACCCTGGTCAACGTAAC 568182 Query 116927 TCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-C 116985 || || |||| | | |||||||| || | |||||| | ||| | || || || | Sbjct 568181 GGGCAGTAGCGTCGTAGGCACGAAGCATGGGGACGATACCGTTAGAGTAACCGTTCGTAC 568122 Query 116986 CCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGC 117044 | ||| |||||| | || || | || | |||||| || | ||| || || || || Sbjct 568121 CAGCGATGTACGAGCC--CTTCGCACGGATGTTGTGGATATGAAGACCGATGCCGCCGGC 568064 Query 117045 CCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACC 117104 |||||| || |||||||| | ||||| || |||| || || || || ||||| | Sbjct 568063 AGTCTTTGAAATCTGTGCGCAGGTCTTGAGAGTGTCGTAAATACCGTCAATGGAGTCGTC 568004 Query 117105 CTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGAAGA 117163 ||| | |||| |||||||||| |||||| || ||| | || || || | |||||||| Sbjct 568003 CTTCATGGCGACGAGGAAGCAGGACGACATCTG-GGCGTGAGGGGTGCCCGAGTTGAAGA 567945 Query 117164 GGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTTATCGTAGGTCTCCAAGACA 117222 | || |||| ||||| |||| |||| | |||||| | ||| ||||| | ||| Sbjct 567944 GCGTCGGTGAGGCGTGCGTGAA-GTACCGCTCGGACATAAGGTTGTACGTCTCGATGACC 567886 Query 117223 GAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 ||||| || ||||| || || | || || ||||| | ||| Sbjct 567885 TTCTCAATGTTGTCGCCGTGGATGCCAACGGAAACACGCATCAGCAT 567839 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||||||||| || |||||| |||||||||||| ||| || Sbjct 3154651 AGCAAAGTCCGTGTGCAGACCCTCGTCTCGACTGATGAGCTCATTCGAGAAGGTCAGGCC 3154710 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 | |||||||||| |||||||||| |||||| ||||| ||| || || ||||| ||||| Sbjct 3154711 TTGCATGAGACCACGCTTCTTCAGCCAGAAGATCGCCGCAAACGACCCCGAGAAAAAGAT 3154770 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACG-CTCGGCAAAGGAGCGGGACTTTGT-ATCA 127696 ||||||||||| || ||||||| | ||| || | ||| || || | || | Sbjct 3154771 GCCCTCCACACAGGCAAACGCAATCAAACGTATCCGGAAA-----GGCACCTCGTCGGTA 3154825 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCT 127745 | ||||||||||||| | |||||| || | ||| || |||| | ||| Sbjct 3154826 ATGTACTTCATCGCCCAGTCTGCCTTCTTTTGGATGCAGGGGATGTTCT 3154874 Score = 143 bits (158), Expect = 3e-29 Identities = 349/518 (67%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||| |||||||||||| | ||| || | || ||| ||||||| || || || Sbjct 2877168 ACACGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAAG 2877109 Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 127359 ||||| |||||||| || ||| | |||| ||||||||| || | ||| Sbjct 2877108 GGGTTGGCCGAGTTCCAGATC-TTGTCGTTGCCAAGGGCGACGAGGAGACGGTCGGCGAC 2877050 Query 127360 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT-GGGAGCG 127418 | |||| ||||||| |||| || | |||||| |||||||| ||| ||||| | Sbjct 2877049 GAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGATGAGCG-ACACCGGGAGGG 2876991 Query 127419 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAGTGT 127478 | || || |||| ||| |||||| | || || ||| | ||| || || |||| Sbjct 2876990 CCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGATGATCTTGTTGATCGTGT 2876931 Query 127479 CCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CAG-CAAACTCTTGGTGGA 127535 || || | ||| | ||||||| || ||| | || || ||||| Sbjct 2876930 CCGGGTGGGGACGGCGGCGGAGGTGGGTGAAGAG---CAGGCAGGCGAAGTCGGTGTGGA 2876874 Query 127536 GACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCT 127595 |||||||||| || |||||||| || || ||||| || || |||||||| || |||| Sbjct 2876873 GACCCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGGCCGCGCT 2876814 Query 127596 TCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGA 127655 |||||| |||||| || | || ||||| ||||||||||| ||||| || |||| Sbjct 2876813 TCTTCAGCCAGAAGATGGACGCGAACGAGCCTGAGAAGAAGATACCCTCAACGGCAGCGA 2876754 Query 127656 ACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA-CCACTTCATCGCCCAC 127714 |||| | || |||||| | || ||| | | || || ||| |||| || ||||| Sbjct 2876753 ACGCGATGAGGCGCTCGCCGAACGAG-GAGCGTTGGTCGGAAATCCACCGCAGGGCCCAG 2876695 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | ||||| |||| ||| || |||| ||| | ||| || Sbjct 2876694 TCGGCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGC 2876657 >seq16 Length=836766 Score = 127 bits (140), Expect = 3e-24 Identities = 310/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| || || ||| |||||||||||| | ||| || | ||| ||| | Sbjct 122879 CTTGGAGTAGGCCGACACACGCGACTCGAAGAAGTTGGCCTTGCCCTGGAGCGAGATCAT 122820 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTG 127342 |||||| || || || ||||| |||||||| | |||| | || | | Sbjct 122819 CTCCATGAAGTCGAAGGGGTTGGACGAGTTCCAGAGCTTGTCGTTGCCGAGGGCGAC--G 122762 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 ||||| || || | |||| |||||||||||| |||| || | |||||| |||||| Sbjct 122761 AGGAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGATG 122702 Query 127403 AG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTAC 127461 || | || ||||| || || | |||| ||| ||| || | || || ||| | Sbjct 122701 AGCGAGACG-GGGAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACCGCCTCCTTGAT 122643 Query 127462 GATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CA 127519 ||| || || |||||| || | ||| | | ||||||| || || Sbjct 122642 GATCTTGTTGATCGTGTCCGGGTGCGGCCGGCGGCGGAGGTGCGTGAAGAG---CAGGCA 122586 Query 127520 G-CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 | | || || ||| ||||||||||| || |||||||| || |||||||| || || Sbjct 122585 GGCGAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGGCC 122526 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||||| |||||| || | || ||||||||||||||||| Sbjct 122525 GGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGAT 122466 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| || ||||| || | || |||||| | || || Sbjct 122465 ACCCTCGACGGCGGCGAAGGCGATGAGGCGCTCGCCGAACGA 122424 Score = 111 bits (122), Expect = 2e-19 Identities = 285/426 (67%), Gaps = 15/426 (4%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || ||||| || || |||||| || || ||||| || ||| ||||||| || Sbjct 439955 GTGCAGGCCCTCATCGCGACTGATGAGCTCGTTGGAGAATGTGAGCCCTTGCATGAGCCC 440014 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| || || ||||| || |||||||| || ||||||||||| Sbjct 440015 GCGCTTCTTCAGCCAGAAGATTGCGGCGAATGATCCGGAGAAGAAAATGCCCTCCACACA 440074 Query 127651 CGCGAACGCAAATAGACG-CTCGGCAAAGGAGCGGGACTTTG-TATCAAACCACTTCATC 127708 || ||||||| || || || | ||| ||||| | | | || ||||||| Sbjct 440075 AGCAAACGCAATCAGGCGTATCCGGAAA-----GGGACATCGCTGGTAATGTACTTCATT 440129 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGAT-CGCTTCA--AAGAGTTCC 127765 ||||| | |||||| |||| ||| || |||| | ||| || | ||| | |||| || Sbjct 440130 GCCCAGTCTGCCTTCTTCTGGATGCAGGGGATGTTCTCCATCCCCTTGAACAAGAAATCT 440189 Query 127766 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGG 127825 ||| |||| | |||| || ||| | || || | ||||||||| |||| Sbjct 440190 TTC---TCTGCTTTGTCTTGGACGTAGGTTTCGATCAACAGACTGTATGTTTCGGCGTGA 440246 Query 127826 ACCATTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884 ||| ||| || || | ||| | |||||||| | || || ||| ||||| || || Sbjct 440247 ACCTGTTCGATCATAG-TCTGGAAGGCGTAGAAGGCACGTGCCTCGGCAATCTGCACTTC 440305 Query 127885 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 127944 ||||| | ||| |||||| || || ||||| || ||||| || || Sbjct 440306 CGTAGCAAACTGAGAGATGAGATTCTCGCCGACGATCCCATCTGATGACGCAAAGAAGGC 440365 Query 127945 CAGGAT 127950 ||| || Sbjct 440366 CAGAAT 440371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506310414560