Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq16 114 2e-20 seq3 93.3 5e-14 >seq2 Length=3385878 Score = 134 bits (148), Expect = 2e-26 Identities = 283/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || || |||||||||| | ||||| || ||| || | Sbjct 2876657 GCCATCGACACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTGCGGTGGATTTCC 2876716 Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || || ||| ||| |||| ||||||||| | ||||| || || ||||||||||| Sbjct 2876717 GACCAACGCTC-CTCGTTCGGCGAGCGCCTCATCGCGTTCGCTGCCGTTGAGGGTATCTT 2876775 Query 65115 CTTCTCCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCC 65173 |||||| || || ||| ||| | || | ||| |||||||||| || |||||||| |||| Sbjct 2876776 CTTCTCAGGCTCGTTC-GCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGCC 2876834 Query 65174 TATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGG 65233 | ||||| || || || || || || || |||||||||||| || || ||| Sbjct 2876835 TCACGTTCTCCAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTCGCCTGCC 2876894 Query 65234 AGCTCTTCAAGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAG 65293 |||||||| | || | ||| | || || ||| || ||| | || | Sbjct 2876895 TGCTCTTCACCCACCTCCGCCGCCGTCCCCACCCGGACACGATCAACAAGATCATCAAGG 2876954 Query 65294 AGGCGGTTGAGATTGAGAAAGGGTTCATCTTGGACGCACTCCC-ATGTAATCTCATCGGT 65352 |||| || |||||||| | | |||| || || || ||||| ||| |||||||| Sbjct 2876955 AGGCCGTCAAGATTGAGCAGGAGTTCCTCACCGAGGCCCTCCCGGTGT-CGCTCATCGGC 2877013 Query 65353 ATGAACTCTGAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||||| | || |||| | ||||||| |||| || | || ||||||||| Sbjct 2877014 ATGAACGCCAAGCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTC 2877067 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||||||||| ||||||||||| ||||| ||||| ||||| || ||| || || | ||| Sbjct 3154793 TTGCGTTTGCCTGTGTGGAGGGCATCTTTTTCTCGGGGTCGTT-TGCGGCGATCTTCTGG 3154735 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||||| |||||||||| |||||| |||||| ||||| || || ||||| Sbjct 3154734 CTGAAGAAGCGTGGTCTCATGCAAGGCCTGACCTTCTCGAATGAGCTCATCAGTCGAGAC 3154675 Query 65206 GAGGGTCTCCACCAGGAGTTTGC 65228 |||||||| ||| ||| ||||| Sbjct 3154674 GAGGGTCTGCACACGGACTTTGC 3154652 Score = 118 bits (130), Expect = 1e-21 Identities = 355/539 (66%), Gaps = 17/539 (3%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| | ||| | ||||| || | | ||||||||||| || ||||||| || Sbjct 567829 CCCTCAGCATATGCTGATGCGTGTTTCCGTTGGCATCCACGGCGACAACATTGAGAAGGT 567888 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||| || |||||| | |||| |||| ||||| |||| || |||| Sbjct 567889 CATCGAGACGTACAACCTTATGTCCGAGCGGTA-CTTCACGCACGCCTCACCGACGCTCT 567947 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| | || || || | |||||||| |||||||| |||||| ||||| | Sbjct 567948 TCAACTCGGGCACCCCTCACGCCCAGATGTCGTCCTGCTTCCTCGTCGCCATGAAGGACG 568007 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| || ||||||| || | ||||| | | || || || || |||||| || | Sbjct 568008 ACTCCATTGACGGTATTTACGACACTCTCAAGACCTGCGCACAGATTTCAAAGACTGCCG 568067 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGAC 75507 | || || || | || ||||| | | | || | | |||||| ||| || || Sbjct 568068 GCGGCATCGGTCTTCATATCCACAACATCCGTGCGA--AGGGCTCGTACATCGCTGGTAC 568125 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || ||| | || | ||||| | || |||||||| | | |||| || || || || Sbjct 568126 GAACGGTTACTCTAACGGTATCGTCCCCATGCTTCGTGCCTACGACGCTACTGCCCGTTA 568185 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATG 75621 || | || ||| || |||| || || |||| ||||| | || || || Sbjct 568186 CGTTGACCA---GGGTGGTAACAAGCGGCCCGGTGCCTTCGCCATCTACCTTGAGCCTTG 568242 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| ||||| ||| | || ||||| || | || ||||| || | ||||||| || Sbjct 568243 GCACGCCGACATCTTTGACTTCCTCGACCTCCGTAAGAACCACGGGAAGGAAGAGG-TCC 568301 Query 75682 GTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 ||| | || || || | |||| ||||| | ||||| ||||||||||| || ||| Sbjct 568302 GTGCGCGTGACCTTTTCTACGCCCTCTGGATCTCCGACCTGTTCATGAAGCGTGTCGAG 568360 >seq16 Length=836766 Score = 114 bits (126), Expect = 2e-20 Identities = 231/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || |||| ||||||||| | || || || || ||||||||||||||||| || || Sbjct 122424 TCGTTCGGCGAGCGCCTCATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCTGGCTCG 122483 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||| | | || | ||| |||||||||| ||||||||||| ||||| ||||| || Sbjct 122484 TTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCGAAC 122543 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACT 65247 || || || || || || |||||||| ||| || || ||| |||||||| | Sbjct 122544 GAGCTCATCTCGCGCGACGAGGGTCTGCACACCGACTTCGCCTGCCTGCTCTTCACGCAC 122603 Query 65248 TTGCGTAATAGACC-CACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGAT 65306 | || | || ||| | || || ||| || ||| | || |||||||| |||| Sbjct 122604 CTCCGCCGCCGGCCGCAC-CCGGACACGATCAACAAGATCATCAAGGAGGCGGTCAAGAT 122662 Query 65307 TGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAA 65366 ||| | | |||| | || || ||||| |||||||| |||||| | || Sbjct 122663 CGAGCAGGAGTTCCTGACCGAGGCCCTCCCCGTCTCGCTCATCGGCATGAACGCCAAGCT 122722 Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 |||| | |||||||||||| || | || || |||||| Sbjct 122723 CATGTGCCAGTACATTGAGTTCGTCGCCGACCGCCTCCTC 122762 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||||| | ||||||||||| | || || | | ||| |||| | || Sbjct 440148 AGAAGAAGGCAGACTGGGCAATGAAGTACATTACCAGCGATGTC-----CCTTTCCGGAT 440094 Query 65080 -CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTAT 65138 ||||| |||||||||| ||||||||||| || ||||||||||| |||||| ||| || Sbjct 440093 ACGCCTGATTGCGTTTGCTTGTGTGGAGGGCATTTTCTTCTCCGGATCATTCGCCGCAAT 440034 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 | ||| |||||||||| || ||||||| ||| || ||||| || || || || Sbjct 440033 CTTCTGGCTGAAGAAGCGCGGGCTCATGCAAGGGCTCACATTCTCCAACGAGCTCATCAG 439974 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || |||||||| || ||| ||| || || Sbjct 439973 TCGCGATGAGGGCCTGCACACGGATTTCGC 439944 >seq3 Length=3240826 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 14540 AACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAG 14599 |||||| | ||||| || | ||| |||||||| |||||||||||| |||||||||| Sbjct 2992182 AACAACCTCAACCTGCTCGCACCCAACGGTCAATTCGGTACGCGTCTCCAGGGTGGTAAG 2992241 Query 14600 GATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACCAAG-GAGGCTCGCAAGATCT 14657 |||||| | ||| | | ||||||||||| | |||| | | | |||| |||| Sbjct 2992242 GATGCTGC-CAGTGCTCGTTACATTTTCAC-GAGTGTACCTCGAGTCACGCGCACCATCT 2992299 Query 14658 TTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAAC 14717 | |||| ||||| |||| |||||| || | ||| || |||| || |||| Sbjct 2992300 TCCATCCCGCCGATGATGCGATTCTCAACAACCTCTTCGAGGAGGGACAGCATATCGAAC 2992359 Query 14718 CAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTA 14777 | || || |||||||| | || ||||| ||| | || ||| | || |||||||| | Sbjct 2992360 CCGAGTTCTACATGCCTGTCGTTCCCATGGTCCTCATCAACGGAGCGGACGGTATCGGCA 2992419 Query 14778 CGGG 14781 | || Sbjct 2992420 CTGG 2992423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568734974080