Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24]
116 sequences; 40,322,879 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq13 93.3 3e-14
>seq13
Length=1285846
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
|| || ||||| || || || ||||| || || | | || ||| ||| ||||| ||
Sbjct 1261212 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGACCATCCTCGAGCTGC 1261153
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || || | |||| | ||||| ||||| ||||||||||| ||||| || ||| ||
Sbjct 1261152 TTTCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG-AATCTT 1261094
Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
| ||||| | || | ||||| || || || ||||| || || || ||||| ||
Sbjct 1261093 GCTCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCAAGCGTGATCGTCTTGCCCGT 1261034
Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787
|| || || ||||| |||||||||
Sbjct 1261033 CAACGTCTTGACAAAGATCTGCATT 1261009
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616
|| ||||| | || ||| || || | || || ||||| || || || ||||| |||||
Sbjct 1261467 TGACCTCCACGCAGACGAAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAATCA 1261408
Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676
| | ||| || ||| || || || ||||| || | |||| | ||||| |||||
Sbjct 1261407 GAGAGGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGG 1261348
Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736
||||||||||| ||||| || | || ||||| | || | || || || ||
Sbjct 1261347 GGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAGGACTCA 1261288
Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || ||||| || || || ||||| | || || || || ||||||||
Sbjct 1261287 ACCTCCAGAGTAATCGTCTTTCCAGTAAGAGTCTTGACGAAGATCTGCAT 1261238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385218655396356
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |