Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq16 131 2e-25 >seq2 Length=3385878 Score = 158 bits (174), Expect = 1e-33 Identities = 388/579 (67%), Gaps = 11/579 (2%) Strand=Plus/Minus Query 118977 TCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACC 119036 || ||||| || || || | | ||||| | ||| | ||| | || | ||| || Sbjct 568413 TCAGAGAGGCCGGGGCACTCAGCAGGGCACATGAGGGTCCAGTCGCCGTCGGACTCGACA 568354 Query 119037 CGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT 119096 ||||||||||| ||||| | ||||||||| || |||| || || || || | ||| Sbjct 568353 CGCTTCATGAACAGGTCGGAGATCCAGAGGGCGTAGAAAAGGTCACGCGCACGGACCTCT 568294 Query 119097 TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCC 119156 || | ||| || || ||| | || | ||||| | ||| || |||||||| || || Sbjct 568293 TCCTTCCCGTGGTTCTTACGGAGGTCGAGGAAGTCAAAGATGTCGGCGTGCCAAGGCTCA 568234 Query 119157 AGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTG 119213 ||||| | |||| | || || |||| |||||| || || | ||||| Sbjct 568233 AGGTAGATGGCGAAGGCACCGGGCCGCTTGTTACCACCCTGGTCAACGTAACGGGCAGTA 568174 Query 119214 GCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-A 119271 |||| | |||||||||| || | |||||| | || | || || || || ||| Sbjct 568173 GCGTCGTAGGCACGAAGCATGGGGACGATACCGTTAGAGTAACCGTTCGTACCAGCGATG 568114 Query 119272 TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 119331 |||||| | || || | || | |||||| || | ||| || || || || ||||| Sbjct 568113 TACGAGCC--CTTCGCACGGATGTTGTGGATATGAAGACCGATGCCGCCGGCAGTCTTTG 568056 Query 119332 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 119391 | || || ||||| | ||||| || |||| || || || || ||||| |||| | | Sbjct 568055 AAATCTGTGCGCAGGTCTTGAGAGTGTCGTAAATACCGTCAATGGAGTCGTCCTTCATGG 567996 Query 119392 CGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGT 119450 ||| |||||||||| |||||| || ||| || || || || | ||||||||| || ||| Sbjct 567995 CGACGAGGAAGCAGGACGACATCTG-GGCGTGAGGGGTGCCCGAGTTGAAGAGCGTCGGT 567937 Query 119451 GTCGCGTGGATGAACATACC-TTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAAT 119509 | ||||| |||| |||| | |||||| || ||| ||||| | ||| ||| Sbjct 567936 GAGGCGTGCGTGAA-GTACCGCTCGGACATAAGGTTGTACGTCTCGATGACCTTCTCAAT 567878 Query 119510 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 || || ||||| || || | || || ||||| | ||| Sbjct 567877 GTTGTCGCCGTGGATGCCAACGGAAACACGCATCAGCAT 567839 Score = 154 bits (170), Expect = 2e-32 Identities = 348/515 (68%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796 || ||| |||||||||||| | ||| || | || ||| ||||||| || || || Sbjct 2877168 ACACGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGCGAGATCATCTCCATGAAGTCGAAG 2877109 Query 129797 GGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACGATCCGAGAC 129855 ||||| |||||||| || || | | |||| ||||||||| || | ||| Sbjct 2877108 GGGTTGGCCGAGTTCCAGATCT-TGTCGTTGCCAAGGGCGACGAGGAGACGGTCGGCGAC 2877050 Query 129856 GTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT-GGGAGCG 129914 | |||| ||||||| |||| || || |||||| |||||||| ||| ||||| | Sbjct 2877049 GAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGATGAGCG-ACACCGGGAGGG 2876991 Query 129915 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCT 129974 | || || |||| ||| |||||| | || || ||| | ||| || || || | Sbjct 2876990 CCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCCTCCTTGATGATCTTGTTGATCGTGT 2876931 Query 129975 CCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGAC 130034 ||| | || | ||| | ||||||| ||| || || |||||||| Sbjct 2876930 CCGGGTGGGGACGGCGGCGGAGGTGGGTGAAGAGCAGGCAGGCGAAGTCGGTGTGGAGAC 2876871 Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| || |||||||| || || ||||| || || |||||||| || ||||||| Sbjct 2876870 CCTCGTCGCGCGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGGCCGCGCTTCT 2876811 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | || ||||| ||||||||||| ||||| || ||||||| Sbjct 2876810 TCAGCCAGAAGATGGACGCGAACGAGCCTGAGAAGAAGATACCCTCAACGGCAGCGAACG 2876751 Query 130155 CAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA-CCACTTCATCGCCCACTGC 130213 | | ||| ||||| | || ||| | | || || ||| |||| || ||||| | Sbjct 2876750 CGATGAGGCGCTCGCCGAACGAG-GAGCGTTGGTCGGAAATCCACCGCAGGGCCCAGTCG 2876692 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||||| |||| ||| || |||| ||| | ||| || Sbjct 2876691 GCCTTCTTCTTGATGCAGGGGATGGTGTCGATGGC 2876657 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| ||| ||| ||||||||||| || |||||| |||||||||||| ||| ||| Sbjct 3154652 GCAAAGTCCGTGTGCAGACCCTCGTCTCGACTGATGAGCTCATTCGAGAAGGTCAGGCCT 3154711 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||||| |||||||||| |||||| ||||| ||| || || ||||| ||||| Sbjct 3154712 TGCATGAGACCACGCTTCTTCAGCCAGAAGATCGCCGCAAACGACCCCGAGAAAAAGATG 3154771 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACG-CTCAGCAAAGGAGCGGGACTTTGT-ATCAA 130193 ||||||||||| || ||||||| | ||| || | ||| || || | || || Sbjct 3154772 CCCTCCACACAGGCAAACGCAATCAAACGTATCCGGAAA-----GGCACCTCGTCGGTAA 3154826 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 ||||||||||||| | ||||| || | ||| || |||| | ||| Sbjct 3154827 TGTACTTCATCGCCCAGTCTGCCTTCTTTTGGATGCAGGGGATGTTCT 3154874 >seq16 Length=836766 Score = 131 bits (144), Expect = 2e-25 Identities = 229/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 |||||| || || | |||| |||||||||||| |||| || || |||||| ||||| Sbjct 122762 GAGGAGGCGGTCGGCGACGAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAT 122703 Query 129898 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| | || ||||| || || | |||| ||| ||| || | || || ||| | Sbjct 122702 GAGCGAGACG-GGGAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACCGCCTCCTTGA 122644 Query 129957 CGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGG 130016 ||| || || || |||| | || | ||| | | ||||||| || Sbjct 122643 TGATCTTGTTGATCGTGTCCGGGTGCGGCCGGCGGCGGAGGTGCGTGAAGAGCAGGCAGG 122584 Query 130017 CAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 130076 | || || ||| ||||||||||| || |||||||| || |||||||| || || | Sbjct 122583 CGAAGTCGGTGTGCAGACCCTCGTCGCGCGAGATGAGCTCGTTCGAGAACGTGAGGCCGG 122524 Query 130077 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 130136 |||||||||| |||||||||| |||||| || | || ||||||||||||||||| | Sbjct 122523 GCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAACGAGCCAGAGAAGAAGATAC 122464 Query 130137 CCTCCACACACGCGAACGCAAAGAGACGCTC 130167 |||| || ||||| || | ||| ||||| Sbjct 122463 CCTCGACGGCGGCGAAGGCGATGAGGCGCTC 122433 Score = 114 bits (126), Expect = 2e-20 Identities = 251/367 (68%), Gaps = 13/367 (4%) Strand=Plus/Plus Query 129880 CTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAAT 129939 ||| ||||| || || || ||| ||| || || || ||| | |||| |||||||||| Sbjct 439808 CTCCGAGTTGATGCCAATCAGGGCACAAGGCAGAGCATCCGTTAGGAACTCCTTCTCAAT 439867 Query 129940 GTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCCAGGTCTATTGCG-CAAA- 129997 || | || |||| | ||| | ||||| ||| ||| || | ||| |||| Sbjct 439868 CTCGAGAGATTCCTTGATGATCGTGTGAACCTCCTCT-TGCGAGCATTTGTGCTTCAAAT 439926 Query 129998 GTCT-TGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTC 130056 | || | |||| | | || || ||| ||| || ||||| || || |||||| || Sbjct 439927 GGCTGTAAAGAAGACAA--GCGAAATCCGTGTGCAGGCCCTCATCGCGACTGATGAGCTC 439984 Query 130057 ATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 || ||||| || ||| ||||||| || |||||||||| |||||| || || || Sbjct 439985 GTTGGAGAATGTGAGCCCTTGCATGAGCCCGCGCTTCTTCAGCCAGAAGATTGCGGCGAA 440044 Query 130117 TGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACG-CTCAGCAAAGG 130175 ||| || |||||||| || ||||||||||| || ||||||| || || || | ||| Sbjct 440045 TGATCCGGAGAAGAAAATGCCCTCCACACAAGCAAACGCAATCAGGCGTATCCGGAAA-- 440102 Query 130176 AGCGGGACTTTG-TATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGG 130234 ||||| | | | || ||||||| ||||| | ||||| |||| ||| || ||| Sbjct 440103 ---GGGACATCGCTGGTAATGTACTTCATTGCCCAGTCTGCCTTCTTCTGGATGCAGGGG 440159 Query 130235 ACGGTCT 130241 | | ||| Sbjct 440160 ATGTTCT 440166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434303268960