Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichosporon_20ovoides_20[genbank_20GCA_5F001752645.1_202016-06-24] 116 sequences; 40,322,879 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8 172 2e-37 seq13 134 4e-26 seq10 114 4e-20 seq6 89.7 2e-12 seq3 89.7 2e-12 >seq8 Length=2605587 Score = 172 bits (190), Expect = 2e-37 Identities = 460/701 (66%), Gaps = 3/701 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| |||||||| | ||||| || || || ||||| || |||||||| || || || Sbjct 450443 GCTATTGGAATCGACCTTGGTACCACCTACTCGTGTGTCGCCGTTTGGCAGAACGACCGC 450384 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || || || || |||||| | || || || || || || || || ||| Sbjct 450383 GTTGAGATCATCGCGAACGACCAGGGTAACCGTACCACCCCCTCCTATGTCGCCTTCACC 450324 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||||||| | || || ||| | || || || || | || || || | || Sbjct 450323 GACTCTGAGCGTCTCATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCTACAAC 450264 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || ||||| || || || | | || || ||| || || Sbjct 450263 ACCGTCTTCGACGCCAAGCGTCTCATCGGCCGCAAGTTCTCCGACCCCGAGGTTCAGTCC 450204 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || | || || | | ||| || || || || || Sbjct 450203 GACATGAAGCACTGGCCCTTCAAGGTCGT-CGACAAG--GGAACCAAGCCCTACATCCAG 450147 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || || ||||| | || || || | || || || || || || |||||| | Sbjct 450146 GTCGAGTACCGCGGTGAGGAGAAGCAGTTCTCTCCTGAGGAGATCTCGTCCATGGTTCTC 450087 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 | || |||||||| | ||||| || || | |||| ||| || | | || || || Sbjct 450086 ATCAAGATGAAGGAGACCGCTGAGGCTTACCTCGGTGGAACCGTCTCCAAGGCCGTCATC 450027 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || ||||| || || || | |||||| || || || || || || | ||| Sbjct 450026 ACCGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGAACCATC 449967 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || | | || || | || || || || ||||| || || || ||||| || || Sbjct 449966 TCTGGTCTTGAGGTCCTCCGTATCATCAACGAGCCCACCGCCGCCGCCATTGCCTACGGT 449907 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 || || || | | || || || || |||| || || || | ||||||||||| Sbjct 449906 CTCGACAAGAAGTCCGAGGGCGAGAAGAACGTTCTCATCTTCGACCTGGGTGGTGGTACC 449847 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 || ||||| || || || || |||| ||||| || || || || || || ||||| ||| Sbjct 449846 TTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACTGCCGGT 449787 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || || || ||||| || || ||||| || |||||||| Sbjct 449786 GACACCCACCTGGGTGGTGAGGACTTTGACAACCGTCTCGT 449746 >seq13 Length=1285846 Score = 134 bits (148), Expect = 4e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | |||||||| || || || ||||| || || || || || || Sbjct 1261240 CATACCACCACGCAGGCGGAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1261181 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| || || || ||||| || || || || || ||||| || || Sbjct 1261180 AGAGAGAGTACGACCATCCTCGAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCCGG 1261121 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || |||||||| || ||| || || || ||||||| || || | | Sbjct 1261120 GGGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCAATCGTGTCCGAGGACT 1261062 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| ||||| || | ||||| || || | || || ||||| ||||||||| Sbjct 1261061 CAACCTCAAGCGTGATCGTCTTGCCCGTCAACGTCTTGACAAAGATCTGCATT 1261009 Score = 111 bits (122), Expect = 5e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | ||||||||||| || || ||||| || || || || || || Sbjct 1261012 CATTCCACCGCGGAGACGAAGAACAAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 1260953 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || ||||| ||||| ||||| ||||| || || Sbjct 1260952 GGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGG 1260893 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || ||||| || || | || || || || || | || || | || Sbjct 1260892 AGGGATGCCTTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCGGACGACTC 1260833 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTT 140722 ||| ||||| || | ||||| ||||| || || || Sbjct 1260832 AACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTT 1260797 >seq10 Length=2164251 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || |||||||||||||| ||||| || || || || || || Sbjct 2138750 CATTCCACCGCGGAGACGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTC 2138691 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||| ||||| || || ||||| || || Sbjct 2138690 GGAGAGCGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGG 2138631 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || ||||| || |||| || || | || Sbjct 2138630 GGGGATCCCCTCCTTGTCCTGGATCTTCAACTTGACATTGTCGATCGTGTCGGACGACTC 2138571 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 2138570 GACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 2138520 Score = 109 bits (120), Expect = 2e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || || | || || || || Sbjct 2138959 AGGACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 2138900 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| || || ||||| ||||| ||||||||||| || || || ||| Sbjct 2138899 TCGAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 2138840 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || | || || || || |||| || || | || || || || || | ||| Sbjct 2138839 TGAATCTTCGACTTCACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATCGTC 2138780 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || || || ||||||||| Sbjct 2138779 TTACCCGTGAGGGTCTTCACGAAGATCTGCATT 2138747 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || ||||| | || || ||||| ||||| || || ||||||||||| ||||| ||||| Sbjct 2138412 TAGTCAGAAAGGGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGG 2138353 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 || || || || || || || |||||||| || | || || || ||||| | ||||| Sbjct 2138352 TCGGGGGGGATCCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCAGAC 2138293 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTT 140722 | || || || || || | ||||| ||||| || || || Sbjct 2138292 GACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTT 2138252 >seq6 Length=2834147 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || ||||| || || || || || || Sbjct 1117961 ATACCACCACGGAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 1117902 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| || || Sbjct 1117901 GAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGG 1117842 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || || | || || | || Sbjct 1117841 GGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 1117782 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || |||| ||||| ||||| || Sbjct 1117781 ACCTCGAGAGTAATGGTCTTACCGGTGAG 1117753 >seq3 Length=3240826 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 834946 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG 835005 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| |||||| Sbjct 835006 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGA 835065 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || | || || || || || | || || | || Sbjct 835066 GGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCG 835125 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || || | ||||| ||||| || Sbjct 835126 ACCTCGAGAGTGATGGTCTTACCGGTGAG 835154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252147953148