Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12400 102 8e-17 >seq12400 Length=4870 Score = 102 bits (112), Expect = 8e-17 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 17288 ATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC 17347 || ||||| |||||||| || || |||||||| ||||||||||| || ||||| || Sbjct 1972 ATTTGAAAGCCGTAAAAACAACGTGCTTCCGCAATTTGAACTTCTCCGCTGAATCTCTCA 2031 Query 17348 GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATG 17407 |||||| || || |||||||| || || ||||| || || | | |||||||||| Sbjct 2032 ATTAGATTCTCATTGACGATGCCATCTGAGGCAGCGAAGAATGCAAGAACATGCTTAATG 2091 Query 17408 AAATATTTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 |||| ||| ||||||| | || | ||| || | | ||||| |||| ||| Sbjct 2092 AAATGTTTCTCGTCCGCATTTAGTTTTTTGTCCCAATCGTGCATGTCTTTAGATAGATCA 2151 Query 17465 ACTTCTTCGGGGGTCCAAAA 17484 | |||||| | |||||||| Sbjct 2152 ATTTCTTCCGCCGTCCAAAA 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517159142231160