Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20]
59,737 sequences; 215,710,044 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq195 105 8e-18
seq12400 87.8 2e-12
>seq195
Length=27450
Score = 105 bits (116), Expect = 8e-18
Identities = 389/609 (64%), Gaps = 4/609 (1%)
Strand=Plus/Plus
Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254
|| || ||||| | | |||||||| || | ||||||| ||| ||||| || ||||||
Sbjct 4740 GTGTAAGGTTCAAAACACTCATTAAACCCAAGAATTTGACTAGTCGATGCCGTGGGCATA 4799
Query 53255 GGTGCCACCAATAAACTATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTC 53313
|| || | ||| | | ||| |||| || || | || | | ||| ||||| | | ||
Sbjct 4800 GGAGCAAGCAAAAGAGAATTCCTAATTCCAGTGTTTT-TCACTTTTTCTTTCAAACTATC 4858
Query 53314 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 53373
||| | ||| | |||| ||| || ||| || || || | |||
Sbjct 4859 CCACTCCCACAATTCCGTTGGTTTCACGTTCCACATGTCAAATTGAAGGATGCCTTGACT 4918
Query 53374 GGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 53433
||| || ||| | | || || || || || ||| | ||| | ||| ||
Sbjct 4919 TGCGGGTGAGCCTGGAAAAGTCTCATAAGGGCCGTCCCTGAGAGCCAACTCATTGGAAGC 4978
Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA-TCTTGTGCTTCCA 53492
||||| || | | ||| | ||||| || |||| |||| || ||||| ||||| |
Sbjct 4979 CTCTAGAGCTGCATGATATAAAGTTTCAAAAATCTGAATATTGAGTCTCTTG-GCTTCAA 5037
Query 53493 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 53552
| |||||| ||| || || | ||| || || |||| |||||||| ||||| |
Sbjct 5038 GCGAATCAAACGGAAGCTTCAAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCAATGC 5097
Query 53553 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 53612
| || || | |||||| | || || ||| || || || | || |||||||| ||||
Sbjct 5098 CAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTTATAT 5157
Query 53613 CTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 53672
| || ||||| || | || | || | | ||| ||||| | ||||| | || |
Sbjct 5158 CAATGATTTTGTTCAAATTGTGGGTAACTTCCTTGGTAACATCATGGAGTTTTTGGAAGT 5217
Query 53673 CAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732
| | | |||||| | | | | | | ||||||||||||| |||||||| || |
Sbjct 5218 CGTAGTTTCCATCCACGATATATGTCGGTAGGGCAATAGATGCCAAGTTACAAACTGCCA 5277
Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792
| |||| || | | ||| | || || || ||||||||||| | ||||| ||||
Sbjct 5278 CTTCATCAGGCGCAGAATACTCGATAATTTCCGTGCAAAGATTGGAGGATTTGATAGTTC 5337
Query 53793 CTAAATTTT 53801
| | ||||
Sbjct 5338 CAAGGTTTT 5346
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 54741 CATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 54800
||||||| ||| ||| | || |||| ||||| || || ||||||||||| || ||||
Sbjct 6645 CATAGTTGTATAGATCTTCAATAACTTGGCTAAAGAGCTTCTTTGTTTCTTTATGAAGAT 6704
Query 54801 TTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 54859
| | ||||| || |||||||| | |||||||||||||| | || || || ||
Sbjct 6705 TGCTAATTGCTATCCTTGCGGCTAGGACAGCATAATCCGGATGACGCGTTGT-CATGTAA 6763
Query 54860 GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 54919
||||| | ||||| | ||| |||| | ||| || || || || ||||| ||| ||
Sbjct 6764 GCTGCAGTCTCGGCGGCTAGATTGTCGAGTTCGACAGTAGTAACCCCATTGAATACCCCA 6823
Query 54920 TGGATAACCTT 54930
| |||||| ||
Sbjct 6824 TTGATAACTTT 6834
>seq12400
Length=4870
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| | ||||||||||||| || || || ||||| | ||| || || ||||||
Sbjct 1401 AACAAAAGACATGCGAAATCGGTATGAAGCCCTTCGTCCCGGGAAATCAACTCATTGGAA 1460
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
||||| | ||| ||||| | ||||| || || ||||| || ||||| |||||||||||
Sbjct 1461 AACGTCAATCCAGGCATCAAACCACGTTTCTTGAGCCAGAAAATGGAAGCAAATGATCC- 1519
Query 24246 GAAAAGAAAATTCCT 24260
||| |||| ||||
Sbjct 1520 -TAAAAAAAACTCCT 1533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593278260659760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |