Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq195 105 8e-18 seq12400 87.8 2e-12 >seq195 Length=27450 Score = 105 bits (116), Expect = 8e-18 Identities = 389/609 (64%), Gaps = 4/609 (1%) Strand=Plus/Plus Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 || || ||||| | | |||||||| || | ||||||| ||| ||||| || |||||| Sbjct 4740 GTGTAAGGTTCAAAACACTCATTAAACCCAAGAATTTGACTAGTCGATGCCGTGGGCATA 4799 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTC 53313 || || | ||| | | ||| |||| || || | || | | ||| ||||| | | || Sbjct 4800 GGAGCAAGCAAAAGAGAATTCCTAATTCCAGTGTTTT-TCACTTTTTCTTTCAAACTATC 4858 Query 53314 CCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 53373 ||| | ||| | |||| ||| || ||| || || || | ||| Sbjct 4859 CCACTCCCACAATTCCGTTGGTTTCACGTTCCACATGTCAAATTGAAGGATGCCTTGACT 4918 Query 53374 GGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGC 53433 ||| || ||| | | || || || || || ||| | ||| | ||| || Sbjct 4919 TGCGGGTGAGCCTGGAAAAGTCTCATAAGGGCCGTCCCTGAGAGCCAACTCATTGGAAGC 4978 Query 53434 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA-TCTTGTGCTTCCA 53492 ||||| || | | ||| | ||||| || |||| |||| || ||||| ||||| | Sbjct 4979 CTCTAGAGCTGCATGATATAAAGTTTCAAAAATCTGAATATTGAGTCTCTTG-GCTTCAA 5037 Query 53493 GGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 53552 | |||||| ||| || || | ||| || || |||| |||||||| ||||| | Sbjct 5038 GCGAATCAAACGGAAGCTTCAAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCAATGC 5097 Query 53553 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 53612 | || || | |||||| | || || ||| || || || | || |||||||| |||| Sbjct 5098 CAATCGGGCGGTGTCTCATGTTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTTATAT 5157 Query 53613 CTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 53672 | || ||||| || | || | || | | ||| ||||| | ||||| | || | Sbjct 5158 CAATGATTTTGTTCAAATTGTGGGTAACTTCCTTGGTAACATCATGGAGTTTTTGGAAGT 5217 Query 53673 CAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTA 53732 | | | |||||| | | | | | | ||||||||||||| |||||||| || | Sbjct 5218 CGTAGTTTCCATCCACGATATATGTCGGTAGGGCAATAGATGCCAAGTTACAAACTGCCA 5277 Query 53733 CCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTC 53792 | |||| || | | ||| | || || || ||||||||||| | ||||| |||| Sbjct 5278 CTTCATCAGGCGCAGAATACTCGATAATTTCCGTGCAAAGATTGGAGGATTTGATAGTTC 5337 Query 53793 CTAAATTTT 53801 | | |||| Sbjct 5338 CAAGGTTTT 5346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 54741 CATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 54800 ||||||| ||| ||| | || |||| ||||| || || ||||||||||| || |||| Sbjct 6645 CATAGTTGTATAGATCTTCAATAACTTGGCTAAAGAGCTTCTTTGTTTCTTTATGAAGAT 6704 Query 54801 TTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 54859 | | ||||| || |||||||| | |||||||||||||| | || || || || Sbjct 6705 TGCTAATTGCTATCCTTGCGGCTAGGACAGCATAATCCGGATGACGCGTTGT-CATGTAA 6763 Query 54860 GCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 54919 ||||| | ||||| | ||| |||| | ||| || || || || ||||| ||| || Sbjct 6764 GCTGCAGTCTCGGCGGCTAGATTGTCGAGTTCGACAGTAGTAACCCCATTGAATACCCCA 6823 Query 54920 TGGATAACCTT 54930 | |||||| || Sbjct 6824 TTGATAACTTT 6834 >seq12400 Length=4870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| | ||||||||||||| || || || ||||| | ||| || || |||||| Sbjct 1401 AACAAAAGACATGCGAAATCGGTATGAAGCCCTTCGTCCCGGGAAATCAACTCATTGGAA 1460 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 ||||| | ||| ||||| | ||||| || || ||||| || ||||| ||||||||||| Sbjct 1461 AACGTCAATCCAGGCATCAAACCACGTTTCTTGAGCCAGAAAATGGAAGCAAATGATCC- 1519 Query 24246 GAAAAGAAAATTCCT 24260 ||| |||| |||| Sbjct 1520 -TAAAAAAAACTCCT 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593278260659760