Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7505 87.8 2e-12 >seq7505 Length=7180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| || || || || | ||||| |||||| | |||| || || || Sbjct 2493 AAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAACGATTAATCTTTGCCGGTAAG 2434 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || || |||| ||||||||| || ||||||||||||||||| |||| ||||| Sbjct 2433 CAACTTGAAGACGGTCGCACCCTCGCAGATTACAACATCCAGAAGGAATCCACCTTGCAT 2374 Query 40894 CTAGTGTTGCG 40904 || || ||||| Sbjct 2373 CTCGTCTTGCG 2363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | |||||||| ||||| || ||||||||||||| || || | || Sbjct 3360 TCAAGGCTAAGATCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCG 3301 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || || || || || | |||||| | || |||||||| |||||||| | | Sbjct 3300 CTGGAAAGCAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGA 3241 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||||| || | |||||| | || || Sbjct 3240 CCTTGCATCTGGTACTACGCTTGCGAGGTGG 3210 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || ||||| | | |||| | | | |||| | |||| Sbjct 3700 ACTGGGAAGACAATCACCCTTGAAGTCGAGTCATCAGACACCATTGATAACG-TGAAGGC 3642 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| || || ||||| | ||||||||||| | |||| || || || Sbjct 3641 CAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAGCAACGCTTGATCTTTGCTGGTAA 3582 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || || | || ||||| |||||||||||||| |||||| | || |||| Sbjct 3581 GCAACTTGAGGATGGACGTACCCTTGCAGACTACAACATCCAAAAGGAGTCTACTTTGCA 3522 Query 40893 TCTAGTGTTGCG 40904 || || ||||| Sbjct 3521 CCTCGTCTTGCG 3510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514834479383120