Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq195 104 3e-17 seq12400 82.4 1e-10 >seq195 Length=27450 Score = 104 bits (114), Expect = 3e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 63979 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 |||||||| ||| ||| || || |||| ||||| || || |||||||| || || |||| Sbjct 6645 CATAGTTGTATAGATCTTCAATAACTTGGCTAAAGAGCTTCTTTGTTTCTTTATGAAGAT 6704 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64097 | || ||||| || |||||||| | |||||||||||||| | || || || || Sbjct 6705 TGCTAATTGCTATCCTTGCGGCTAGGACAGCATAATCCGGATGACGCGTTGT-CATGTAA 6763 Query 64098 GCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCT 64157 ||||| | ||||| || ||| |||| | ||| || || || || ||||| ||| || Sbjct 6764 GCTGCAGTCTCGGCGGCTAGATTGTCGAGTTCGACAGTAGTAACCCCATTGAATACCCCA 6823 Query 64158 TGAATAACCTT 64168 | ||||| || Sbjct 6824 TTGATAACTTT 6834 >seq12400 Length=4870 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||||||||||||| || || || ||||| | ||| || || || ||| Sbjct 1401 AACAAAAGACATGCGAAATCGGTATGAAGCCCTTCGTCCCGGGAAATCAACTCATTGGAA 1460 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| | ||| ||||| | ||||| || || ||||| || |||||||| |||||||| Sbjct 1461 AACGTCAATCCAGGCATCAAACCACGTTTCTTGAGCCAGAAAATGGAAGCAAATGATCCT 1520 Query 33693 GAAAAGAA 33700 |||| || Sbjct 1521 AAAAAAAA 1528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629347307325360