Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7505 105 7e-18 >seq7505 Length=7180 Score = 105 bits (116), Expect = 7e-18 Identities = 138/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCT 139619 |||| ||||| ||||| |||||||||||||| || | | |||| ||||| | || Sbjct 2087 TGAAGAGTAGATTCTTTCTGAATGTTATAATC-AGCA-AGAGTTCGACCATCTTCCAACT 2144 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 ||||||| ||| | || || ||||| ||||| ||||| ||||| |||||||| ||| | Sbjct 2145 GTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCCCTCTTTGTC-TTGAATC 2203 Query 139680 TTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738 || | |||| | | || | ||||||| || ||| || |||| ||| | ||||| ||| Sbjct 2204 TTGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAAGGGTGATAGTCTTCCCG 2263 Query 139739 GTCAA 139743 ||||| Sbjct 2264 GTCAA 2268 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||| |||| || ||||||||||||||||||||||| | Sbjct 1767 CCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCC 1826 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || || ||||||||||| | || ||||| |||||||| || || Sbjct 1827 AATGTTCGGCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGG 1886 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| |||| | || | | || | |||||| | | ||||| Sbjct 1887 ATGCCCTCTTTGTC-CTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCAC 1945 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAA 139743 || | || | || || |||||||| Sbjct 1946 TTCCAAAGTAATGGTTTTACCGGTCAA 1972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| || |||| ||| | || | || | ||||| || ||||||||||| ||||| || Sbjct 2923 GCCTCCACGTAGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGC 2982 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | || | ||||| || |||||||||||| |||||| || |||||||| || | Sbjct 2983 T-AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTG 3041 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| ||| || | | || | || |||| || || | Sbjct 3042 GAATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAA 3101 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAA 139743 |||| | || | ||||||||||| || Sbjct 3102 CCTCGAGTGTAATAGTCTTGCCGGTTAA 3129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495693582810400