Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7505 102 8e-17 >seq7505 Length=7180 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||||| ||||| || || |||||||| ||||| ||||| | Sbjct 1767 CCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCC 1826 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | || || |||||||||||||| | || ||||| |||||||| || || Sbjct 1827 AATGTTCGGCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGG 1886 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| |||||| || | | || | ||||| | | ||| ||| Sbjct 1887 ATGCCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCACT 1946 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAA 143163 || | ||| | || || |||||||| Sbjct 1947 TCCAAAGTAATGGTTTTACCGGTCAA 1972 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 |||||| |||| ||| | || | ||| | |||||||| ||||| ||||||||||| || Sbjct 2923 GCCTCCACGTAGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGC 2982 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || | ||||| ||||||||||||||| |||||| || |||||||| || | Sbjct 2983 T-AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTG 3041 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| || ||| || | | || | ||| || | || ||| | Sbjct 3042 GAATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAA 3101 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAA 143163 | || | || | ||||||||||| || Sbjct 3102 CCTCGAGTGTAATAGTCTTGCCGGTTAA 3129 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGT 143038 ||||| ||||||||||| || ||||| ||||| || | | |||| ||||| | Sbjct 2086 ATGAAGAGTAGATTCTTTCTGAATGTTATAATC-AGCA-AGAGTTCGACCATCTTCCAAC 2143 Query 143039 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATT 143098 |||||||| ||| | || || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 2144 TGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCCCTCTTTGTCTTGAATC 2203 Query 143099 TTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCG 143158 || ||| | | || | ||||| | || || ||||||| || | ||||| ||| Sbjct 2204 TTGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAAGGGTGATAGTCTTCCCG 2263 Query 143159 GTCAA 143163 ||||| Sbjct 2264 GTCAA 2268 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || | ||| | || ||||| || || ||||||||||| Sbjct 2351 CCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCG 2410 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| ||||| ||| |||| | ||||| || || || || Sbjct 2411 AGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGA 2470 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || ||||| | || | ||||| | | ||| || Sbjct 2471 ATACCTTCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCGACC 2530 Query 143138 TCAACAGTCACCGTCTTGCCGGTCA 143162 |||| || | ||||| || |||| Sbjct 2531 TCAAGCGTTATTGTCTTCCCAGTCA 2555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506635806009840