Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3790 158 1e-33 seq4777 91.5 2e-13 seq5689 89.7 6e-13 seq1300 87.8 2e-12 >seq3790 Length=10706 Score = 158 bits (174), Expect = 1e-33 Identities = 313/460 (68%), Gaps = 24/460 (5%) Strand=Plus/Plus Query 164535 TGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC 164594 ||| || || ||| || |||||||||||||| || |||| || | |||||| Sbjct 8888 TGGTCCACCGGGTACTGGAAAAACATTAATGGCGAGACAAATTGGAAAAA-TGTTAAATG 8946 Query 164595 ---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTC 164651 | || || || || || ||||| |||||| | || || |||| ||||| || || Sbjct 8947 CAAGAGAACCA--AAGATCGTAAATGGACCTGAAATTTTAAATAAATTCGTAGGAGAATC 9004 Query 164652 AGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACA-AAAG--AAAGCAGG 164708 ||| ||| || || | || ||| || || |||| |||| | |||| |||| || Sbjct 9005 TGAAAAAAATATTCGAGAATTATTTTCAGAAGCAGAAGTAGAATATAAAGCTAAAGGAGA 9064 Query 164709 TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG 164768 | | | || |||||| |||| | |||||||| ||||||| |||| ||| || | Sbjct 9065 TGAATCAGGT---TTACATATTATAATATTTGATGAATTAGATGCCATTTGTAAACAAAG 9121 Query 164769 TGGTGATAATATTATTCA------------TGATGCAGTGGTTAATCAGTTGCTTTCTAA 164816 ||| || | | | |||| ||||||| ||||| || | ||||| Sbjct 9122 AGGTTCTACTGGTGGTGGAACTGGAGTGGGTGATTCAGTGGTCAATCAATTATTATCTAA 9181 Query 164817 AATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGA 164876 ||| ||||| || || |||||||||||||||||| | || ||||| || ||| || Sbjct 9182 AATGGATGGAGTGGATCAATTAAATAATATTTTAATTATTGGAATGACTAATCGATTAGA 9241 Query 164877 TTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATT 164936 | | |||||||| |||||| || |||| |||||||||||| | | || ||||| ||| Sbjct 9242 TATGATTGATGAAGCTTTACTAAGACCAGGTCGATTAGAAGTTCATATGGAAATCTCATT 9301 Query 164937 ACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCAT 164976 ||| || || | || || | ||||||||||| ||||| Sbjct 9302 ACCTGATGAAAAGGGTCGTTTACAAATTTTAAACATTCAT 9341 >seq4777 Length=9450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 19326 TAGTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTT 19385 |||| ||| || |||||| | | || ||||||| | |||||||| || ||||| Sbjct 4995 TAGTCAAAGTTCTTTTAAGACAAACAAGAAGACCTGAACTTGGTGATAAATTCTCTTCTA 4936 Query 19386 TTACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTA 19445 || ||||||||| |||||| | ||| || ||||||||||||||||||| Sbjct 4935 GACATGGTCAAAAAGGAGTTTGTGGTTTAATTGTTCAACAAGAAGATATGCCTTTTAACG 4876 Query 19446 AAGATGGTA-TAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | | |||| | || || ||| ||||||| |||||||||| ||| || ||||||||| Sbjct 4875 ATAAAGGTACTTGT-CCAGATATTATTATGAACCCACATGGTTTCCCTTCTCGAATGAC 4818 >seq5689 Length=8510 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 7009 TAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTC 7068 ||||||||||||| | ||| || || ||||| | | ||| | | ||| |||||| Sbjct 3927 TAAAATTGACACATCATATGGCAGGGGGGTAATGCCATTTTATCCAGAGCAGCAGGATTC 3986 Query 7069 CAAGCAGTCATTAAAATACGTCTATCATTTGGATT-TGTTTTTAATTTTGTTATAATTAT 7127 ||||| || | | || | |||||| | ||||| || | | || ||| || Sbjct 3987 CAAGCGGTGAGAATCATTCTTCTATCGGTAGGATTGTGGATGATAGAATGAATTAA--AT 4044 Query 7128 TTGTAA-TTGATCTATACCCTGACCTTCATAATTA---GTATGACAATTTATATAATTAG 7183 || ||| |||||||| || |||||| ||||| | || ||| | | ||||| | Sbjct 4045 TTTTAATTTGATCTACGCCTTGACCTGAATAATCATGCTTAGGACCA---AGATAATCTG 4101 Query 7184 CTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGAT 7243 | |||||||| | ||||||||| |||||||| ||||||| | ||| |||| || | Sbjct 4102 CACCAAAATGACGCCATTGAAATCCATAAATTGGACCTAGAGTACCAGTTTCATAATCTT 4161 Query 7244 TAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAAT 7292 | ||||| | | || ||||| | ||||||||| | |||||| || Sbjct 4162 TCAATCCGACTGAATCTAAATATTTTCTTGATCCATTTGGATCCCATAT 4210 >seq1300 Length=16371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | |||||| | ||||| |||| ||| ||||| ||||| ||| Sbjct 14932 GTAAAAGTTAGAATTAGATCTACACGTATACCAGAAACAGGAGATAAATTTGCATCTAGA 14991 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||||| || |||||| ||||| | |||||||||||||| ||||| | Sbjct 14992 CATGGACAAAAAGGAACTGTTGGTATACTTTATAGACAAGAAGATATGCCATTTACATCA 15051 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| || ||| | || || || |||||||| | ||| |||||||| Sbjct 15052 GAAGGAATATGTCCAGATGTAATAATCAATCCACATGCCATACCATCACGAATGAC 15107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595427054929200