Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7505 105 6e-18 seq16992 82.4 7e-11 >seq7505 Length=7180 Score = 105 bits (116), Expect = 6e-18 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 94757 AACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGAT 94816 |||| ||| |||| | | || ||||| | | || | ||| | |||||||||||| Sbjct 2900 AACGTTTTAACAAAAATCTGCATGCCTCCACGTAGACGGAGCACGAGATGCAAAGTAGAT 2959 Query 94817 TCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 |||||||| | ||| ||||| ||| | || | ||| || || ||||| || |||| Sbjct 2960 TCCTTTTGAATGTTGTAATCAGCT-AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAA 3018 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||| |||| ||||||||||| ||||||||||| ||||| | || ||||||||||| Sbjct 3019 GATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGAC 3075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 94754 GCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTA 94813 ||| ||| ||| |||| ||| || ||||| | || ||||| || | ||||| || Sbjct 2324 GCTTACGTTTTGACAAAAATTTGCATACCTCCGCGCAGACGCAAGACGAGATGCAAGGTG 2383 Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGC 94871 |||||||| || | ||| ||||| | || || || || || || || || ||| Sbjct 2384 GATTCCTTCTGGATGTTGTAATC--TGCGAGGGTGCGACCGTCTTCAAGTTGCTTACCGG 2441 Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||| ||| || || || ||||||||||| ||||| | ||| || || || | Sbjct 2442 CAAAGATTAATCGTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGCTTTTA 2501 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | | | ||||||| ||||| |||| ||| || || || ||||| ||| Sbjct 2502 CATTATCAATTGTGTCAGACGATTCGACCTCAAGCGTTATTGTCTTCCCAGTCAGA 2557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 || |||| ||| || | |||| ||||| || |||||||| || | ||| ||||| ||| Sbjct 3210 CCACCTCGCAAGCGTAGTACCAGATGCAAGGTCGATTCCTTCTGAATGTTGTAATCCGCT 3269 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | ||| | |||||| || || ||||| | || |||| | |||||| || ||||| Sbjct 3270 AAG-GTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAAATTAGCCGTTGCTGGTCCGGAGG 3328 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||| ||||||||||| | || || |||||||| | ||| ||||| | || || Sbjct 3329 AATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCAAC 3388 Query 94960 GTCAATCGTGATGGTTTTTCCAGT 94983 || | ||||| || |||||||| Sbjct 3389 CTCCAAAGTGATAGTCTTTCCAGT 3412 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG-- 94850 ||||| || | |||||||||||| |||||||| | ||| || | || || || | Sbjct 3510 CGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGT--CTGCAAGGGTACGTC 3567 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| || || || || ||||||| || | |||||| || ||||| |||||||| | Sbjct 3568 CATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATACCTTCCT 3627 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || ||||| ||| | | ||||| | ||||| |||| |||| Sbjct 3628 TGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACTTCAAGGGTGA 3687 Query 94971 TGGTTTTTCCAGT 94983 | || || ||||| Sbjct 3688 TTGTCTTCCCAGT 3700 >seq16992 Length=3647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || |||| |||||| ||||| || || ||||| ||||| | ||||||||||||||| | Sbjct 2246 ATCAATCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTG 2187 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 ||| |||||||| |||||||||| ||||| || || || || || Sbjct 2186 TCGATTGTGTCAGCTGCTTCGACGTCAAGGGTGATAGTCTTACCCGTGAG 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447956455357320