Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1314 105 1e-18 seq2625 100 4e-17 seq1363 84.2 3e-12 seq11230 82.4 1e-11 >seq1314 Length=16326 Score = 105 bits (116), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| ||||||||||||||||| ||||| || || ||||| ||||| || || ||||||| Sbjct 10693 TCTTACGAGATAACATCCAAGGTATCACTAAACCTGCTATTCGTCGACTCGCCCGTCGTG 10634 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 |||| || |||||| ||||||| || | || ||||| | ||||| |||| Sbjct 10633 GTGGTGTTAAGCGTATCTCTGGTTTAATTTACGAAGAAACTCGTGGTGTT 10584 >seq2625 Length=12661 Score = 100 bits (110), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||||| |||| ||||| || ||||||||||| || || ||||| || ||| | || Sbjct 9114 GTCATCGCAAGATC-CTTCGTGACAACATCCAAGGTATTACTAAGCCTGCCATCAGACGA 9056 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 | |||||||| ||||||||||| ||| |||||||| || | ||||| || | || | | Sbjct 9055 TTAGCTCGTCGAGGTGGAGTCAAACGTATCTCTGGACTGATTTATGAGGAAACCCGAGGT 8996 Query 16559 GTTTTGAAG 16567 ||| | ||| Sbjct 8995 GTTCTAAAG 8987 >seq1363 Length=16151 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| ||| || |||||||||||||| ||||||||||| || ||||| || || |||||| Sbjct 15086 AGAT-TCTCCGTGATAACATCCAAGGTATCACCAAGCCCGCAATCCGACGACTAGCTCGT 15028 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||||| || || ||| | || ||| | | || || |||| Sbjct 15027 CGAGGTGGTGTGAAACGTATTTCAGGACTAATTTACGAGGAGA 14985 >seq11230 Length=5299 Score = 82.4 bits (90), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||| ||||| |||||||||||||| ||||| | || || | Sbjct 5114 AGATCT-TGCGTGATAACATTCAAGGTATCACCAAGCCAGCAATCCGAAGACTTGCCAGA 5172 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || ||||| || ||||| |||| ||||| | || ||||| | || | ||| |||||| Sbjct 5173 CGAGGTGGTGTGAAGCGAATCTCCGGATTAATTTACGAAGAAACCCGAGGTGTCTTGAAG 5232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020582042741