Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20]
59,737 sequences; 215,710,044 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1314 105 1e-18
seq2625 100 4e-17
seq1363 84.2 3e-12
seq11230 82.4 1e-11
>seq1314
Length=16326
Score = 105 bits (116), Expect = 1e-18
Identities = 90/110 (82%), Gaps = 1/110 (1%)
Strand=Plus/Minus
Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511
|||| ||||||||||||||||| ||||| || || ||||| ||||| || || |||||||
Sbjct 10693 TCTTACGAGATAACATCCAAGGTATCACTAAACCTGCTATTCGTCGACTCGCCCGTCGTG 10634
Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561
|||| || |||||| ||||||| || | || ||||| | ||||| ||||
Sbjct 10633 GTGGTGTTAAGCGTATCTCTGGTTTAATTTACGAAGAAACTCGTGGTGTT 10584
>seq2625
Length=12661
Score = 100 bits (110), Expect = 4e-17
Identities = 101/129 (78%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498
||||||||| |||| ||||| || ||||||||||| || || ||||| || ||| | ||
Sbjct 9114 GTCATCGCAAGATC-CTTCGTGACAACATCCAAGGTATTACTAAGCCTGCCATCAGACGA 9056
Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558
| |||||||| ||||||||||| ||| |||||||| || | ||||| || | || | |
Sbjct 9055 TTAGCTCGTCGAGGTGGAGTCAAACGTATCTCTGGACTGATTTATGAGGAAACCCGAGGT 8996
Query 16559 GTTTTGAAG 16567
||| | |||
Sbjct 8995 GTTCTAAAG 8987
>seq1363
Length=16151
Score = 84.2 bits (92), Expect = 3e-12
Identities = 81/103 (79%), Gaps = 1/103 (1%)
Strand=Plus/Minus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||| ||| || |||||||||||||| ||||||||||| || ||||| || || ||||||
Sbjct 15086 AGAT-TCTCCGTGATAACATCCAAGGTATCACCAAGCCCGCAATCCGACGACTAGCTCGT 15028
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|| ||||| || || ||| | || ||| | | || || ||||
Sbjct 15027 CGAGGTGGTGTGAAACGTATTTCAGGACTAATTTACGAGGAGA 14985
>seq11230
Length=5299
Score = 82.4 bits (90), Expect = 1e-11
Identities = 91/120 (76%), Gaps = 1/120 (1%)
Strand=Plus/Plus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||||| | || |||||||| ||||| |||||||||||||| ||||| | || || |
Sbjct 5114 AGATCT-TGCGTGATAACATTCAAGGTATCACCAAGCCAGCAATCCGAAGACTTGCCAGA 5172
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567
|| ||||| || ||||| |||| ||||| | || ||||| | || | ||| ||||||
Sbjct 5173 CGAGGTGGTGTGAAGCGAATCTCCGGATTAATTTACGAAGAAACCCGAGGTGTCTTGAAG 5232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79020582042741
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |