Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7505 111 1e-19 >seq7505 Length=7180 Score = 111 bits (122), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| ||||| || || || | ||| | |||||| ||||| ||||||||||||| |||| Sbjct 3210 CCACCTCGCAAGCGTAGTACCAGATGCAAGGTCGATTCCTTCTGAATGTTGTAATCCGCT 3269 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| || ||||| || ||| | |||| || |||||||||||||| Sbjct 3270 -AAGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAAATTAGCCGTTGCTGGTCCGGAGG 3328 Query 131127 GATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 3329 AATGCCTTCTTTGTC 3343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 ||| || || | ||| ||||| | ||| | || || |||||||||||||||||||| || Sbjct 2923 GCCTCCACGTAGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGC 2982 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | ||| || || ||||| || || || || |||| || |||||||| || || | Sbjct 2983 T-AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTG 3041 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||| ||||| ||| || ||||| | || | ||||||| ||| || | Sbjct 3042 GAATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAA 3101 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTA 131212 |||| |||| || || ||||||| Sbjct 3102 CCTCGAGTGTAATAGTCTTGCCGGTTA 3128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||||| || | ||| | ||| || ||||| || ||||||||||| Sbjct 2351 CCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCG 2410 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || || ||||| || || ||||||| || || ||||| || || Sbjct 2411 AGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGA 2470 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 2471 ATACCTTCCTTGTC 2484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| || | || | || ||||||||||| |||||||| || Sbjct 3498 CCACCGCGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCA 3557 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || ||||| || || |||| || || |||||||| |||||| Sbjct 3558 AGGGTACGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGG 3617 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 3618 ATACCTTCCTTGTC 3631 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 || || || | ||| || |||| ||| | || ||||| ||||||||||| ||||| || Sbjct 1767 CCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCC 1826 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| | || | ||||| || || || || ||| | || | ||||||||| || || || Sbjct 1827 AATGTTCGGCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGG 1885 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || |||||||| ||||| ||| | | || | || || | || || | Sbjct 1886 GATGCCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCAC 1945 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 || | |||| |||||||||||| Sbjct 1946 TTCCAAAGTAATGGTTTTACCGGT 1969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471660342142080