Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7505 89.7 4e-13 >seq7505 Length=7180 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 16703 ATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTG 16759 |||||| ||||| || || | || || | ||| || || ||||| ||||| ||||| Sbjct 1758 ATTTACAATCCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTA 1817 Query 16760 TAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGG 16819 || || |||| ||| | | ||||| | |||||| || || |||| || ||||| || Sbjct 1818 TAATCTGCCAATGTTCGGCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGA 1877 Query 16820 TCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCG 16879 || || | |||||||||||| ||||| |||||| | | | | ||||| Sbjct 1878 TCAGGCGGGATGCCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGAC 1937 Query 16880 GGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAA 16927 | ||| ||||| || |||||||| ||||||| | |||| |||| Sbjct 1938 GATTCCACTTCCAAAGTAATGGTTTTACCGGTCAAGCTGTTGAGAAAA 1985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || || || || | ||| || || || || || || ||||| || || || Sbjct 2063 CCTCCACGAAGTCTGAGGACGAGATGAAGAGTAGATTCTTTCTGAATGTTATAATCAGCA 2122 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || ||||| ||||| |||||| |||| ||||| ||||| ||| ||| Sbjct 2123 AGAGTTCGACCATCTTCCAACTGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGA 2182 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | |||||| || ||| Sbjct 2183 ATGCCCTCTTTGTCTTGAATCTTGGCT--TTAACGTTATCGATGGTGTCGGAGGACTCAA 2240 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCA 16913 ||| | |||||| || || ||||||| Sbjct 2241 CTTCAAGGGTGATAGTCTTCCCGGTCA 2267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404793077833630