Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7505 120 3e-22 >seq7505 Length=7180 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| ||||||||||| || |||||||| | || |||||||| || Sbjct 2493 AAGATTCAAGACAAGGAAGGTATTCCACCTGACCAACAACGATTAATCTTTGCCGGTAAG 2434 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || |||||| || | ||||||||||| || || ||||||||| | ||| Sbjct 2433 CAACTTGAAGACGGTCGCACCCTCGCAGATTACAACATCCAGAAGGAATCCACCTTGCAT 2374 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||||| ||||||||||| Sbjct 2373 CTCGTCTTGCGTCTGCGCGGAGGT 2350 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 |||||||| || || | || || || || ||| || ||||||| | || || |||| Sbjct 3129 TTAACCGGCAAGACTATTACACTCGAGGTTGAATCCTCCGATACGATTGATAATGTCAAG 3070 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 ||| || ||||||||||| ||||||||||| ||||| || || | || ||||| || Sbjct 3069 GCAAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAGCAGCGATTGATCTTTGCTGGT 3010 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| |||| ||| ||| ||| | | ||||||||||||||||| ||||| || Sbjct 3009 AAACAACTAGAAGATGGCCGTACCCTAGCTGATTACAACATTCAAAAGGAATCTAC 2954 Score = 116 bits (128), Expect = 3e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 ||| ||||| || || |||| |||||||| || || |||| ||| | || | | || Sbjct 2269 TTTGACCGGGAAGACTATCACCCTTGAAGTTGAGTCCTCCGACACCATCGATAACGTTAA 2210 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 | || ||||||||||| ||||| ||||| || ||||||||||| || || ||||| || Sbjct 2209 AGCCAAGATTCAAGACAAAGAGGGCATTCCTCCGGATCAACAACGGCTCATTTTTGCGGG 2150 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 |||||||| || ||| || || | | ||||| |||||||| |||||||| || Sbjct 2149 TAAACAGTTGGAAGATGGTCGAACTCTTGCTGATTATAACATTCAGAAAGAATCTAC 2093 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 |||| | || | || ||||||||||| | ||| | ||||||||| | | || || | Sbjct 1985 TTTTCTCAACAGCTTGACCGGTAAAACCATTACTTTGGAAGTGGAATCGTCTGACACAAT 1926 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || | || |||||||| ||||| ||||| || || || ||||| || ||||| Sbjct 1925 TGACAATGTGAAGGCTAAAATTCAGGACAAAGAGGGCATCCCGCCTGATCAGCAGCGTCT 1866 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || ||||| | |||||| ||| || | | ||||| ||||||||||| Sbjct 1865 CATTTTCGCTGGTAAACAACTTGAGGATGGCCGAACATTGGCAGATTATAACATTCAAAA 1806 Query 22407 AGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 ||| || || | ||| ||||| | || | || ||||| || Sbjct 1805 AGAGTCAACTCTTCATCTAGTTCTCCGTCTCCGTGGAGGATT 1764 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || || || ||||| | || || || | |||| ||| | ||| || |||| Sbjct 3415 TTGACTGGAAAGACTATCACTTTGGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAG 3356 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 || || |||||||| || || ||||| || || || ||||| || || || || || Sbjct 3355 GCTAAGATCCAAGACAAAGAAGGCATTCCTCCGGACCAGCAACGGCTAATTTTCGCTGGA 3296 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || || | |||||| ||||||| | | |||||||||||||| || ||||| ||| | Sbjct 3295 AAGCAACTCGAGGATGGCCGCACCTTAGCGGATTACAACATTCAGAAGGAATCGACCTTG 3236 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| | || | || ||||| || ||| Sbjct 3235 CATCTGGTACTACGCTTGCGAGGTGGT 3209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22239 TTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAA 22298 |||||| || || || |||| |||||||| || | | || ||| | || | | || Sbjct 3704 TTTAACTGGGAAGACAATCACCCTTGAAGTCGAGTCATCAGACACCATTGATAACGTGAA 3645 Query 22299 ACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGG 22358 || |||||||||||||| ||||| || || || || ||||| | || ||||| || Sbjct 3644 GGCCAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAGCAACGCTTGATCTTTGCTGG 3585 Query 22359 CAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCAT 22418 || || | |||||| || ||| | | || |||||||| ||||| || || || | Sbjct 3584 TAAGCAACTTGAGGATGGACGTACCCTTGCAGACTACAACATCCAAAAGGAGTCTACTTT 3525 Query 22419 ACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || | || ||||| | ||||| ||| Sbjct 3524 GCACCTCGTCTTGCGTCTTCGCGGTGGT 3497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419422419259405