Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7505 150 3e-31 seq16992 96.9 6e-15 >seq7505 Length=7180 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| | || || || |||||||| ||||| ||||| || | | Sbjct 2639 CCACCACGCAGACGGAGTACAAGATGCAGAGTAGACTCTTTCTGGATATTATAGTCAGCG 2698 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | ||||| || ||||| || | | |||||| || ||||| Sbjct 2699 AGAGTACGCCCATCCTCAAGTTGCTTGCCAGCGAAAATCAACCGTTGTTGATCTGGTGGG 2758 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| ||||| ||| ||||||||||| | |||||||| Sbjct 2759 ATGCCTTCCTTATCTTGAATCTTGGCCTTTACGTTATCGATGGTGTCGGAGGATTCTACC 2818 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 ||||| || ||||| ||||| || Sbjct 2819 TCCAAAGTAATGGTCTTTCCAGT 2841 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | | || | || || || || ||||| || ||||||||||| | Sbjct 2061 TTCCTCCACGAAGTCTGAGGACGAGATGAAGAGTAGATTCTTTCTGAATGTTATAATCAG 2120 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | |||||||| ||||| || || || || ||||| | |||||| || || | Sbjct 2121 CAAGAGTTCGACCATCTTCCAACTGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAG 2180 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| || |||||||||||||| || || ||| ||||||||||| | || || | Sbjct 2181 GAATGCCCTCTTTGTCTTGAATCTTGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAA 2240 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||| | |||||| || || || || Sbjct 2241 CTTCAAGGGTGATAGTCTTCCCGGT 2265 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| ||||| || | ||| | || ||||| ||||||||||| || || | Sbjct 3498 CCACCGCGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCA 3557 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || | | ||| ||||| || || Sbjct 3558 AGGGTACGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGG 3617 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||| ||| || |||||||||| ||| || ||| Sbjct 3618 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACT 3677 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || || || || Sbjct 3678 TCAAGGGTGATTGTCTTCCCAGT 3700 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || ||||| || | || | ||||| || || |||||||| ||||| | | Sbjct 2351 CCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCG 2410 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| ||||| || || | || ||||||||| |||||| Sbjct 2411 AGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGA 2470 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| || || || || || ||||| | ||||| || Sbjct 2471 ATACCTTCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCGACC 2530 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | || || || || || || || Sbjct 2531 TCAAGCGTTATTGTCTTCCCAGTCAG 2556 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | || | || || || ||||||||||| ||||||||||| | Sbjct 1766 TCCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGC 1825 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| | ||||| || | || || || ||||| ||||| | || || || || || Sbjct 1826 CAATGTTCGGCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGG 1885 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| || ||||| ||||| || ||||| || || || ||||| | ||||| || Sbjct 1886 GATGCCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCAC 1945 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 |||||| || |||||||| || || | | | |||| Sbjct 1946 TTCCAAAGTAATGGTTTTACCGGTCAAGCTGTTGA 1980 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | ||| | ||||| || | || || || || || ||||| ||||| | Sbjct 3210 CCACCTCGCAAGCGTAGTACCAGATGCAAGGTCGATTCCTTCTGAATGTTGTAATCCGCT 3269 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||||| || ||||| || || | ||| ||||| || ||| Sbjct 3270 AAGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAAATTAGCCGTTGCTGGTCCGGAGGA 3329 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| |||||||| ||||||||||| | || || || Sbjct 3330 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 3389 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||||| || ||||| || Sbjct 3390 TCCAAAGTGATAGTCTTTCCAGT 3412 Score = 96.9 bits (106), Expect = 6e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 || || || ||||| ||||| ||||| | || || | |||||||||| || || || Sbjct 2954 GTAGATTCCTTTTGAATGTTGTAATCAGCTAGGGTACGGCCATCTTCTAGTTGTTTACCA 3013 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || | || || || || |||||||| |||||||||||||| |||||||||||| Sbjct 3014 GCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTTGCCTTG 3073 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || || || | ||||| || || | || || || || || || Sbjct 3074 ACATTATCAATCGTATCGGAGGATTCAACCTCGAGTGTAATAGTCTTGCCGGT 3126 >seq16992 Length=3647 Score = 96.9 bits (106), Expect = 6e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||| ||||| || || |||||||||||||| ||||| ||||||||||| ||||| Sbjct 2241 TCGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGAT 2182 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||| ||| || || | |||||| || || ||||||||| Sbjct 2181 TGTGTCAGCTGCTTCGACGTCAAGGGTGATAGTCTTACCCGTGAGG 2136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920934213033640