Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7505 116 9e-21 seq16992 84.2 5e-11 >seq7505 Length=7180 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| ||||| | ||| ||||||||||||| ||||||||| || | || Sbjct 3504 CGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTA 3563 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| || || ||||| | || |||||||| ||| || ||| Sbjct 3564 CGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATACCT 3623 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| || | |||||||| || || || || | Sbjct 3624 TCCTTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACTTCAAGG 3683 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 3684 GTGATTGTCTTCCCAGT 3700 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| ||||| || | |||||| || || || || | ||||| || || |||||||| Sbjct 3240 GTCGATTCCTTCTGAATGTTGTAATCCGCTAAGGTGCGGCCATCCTCGAGTTGCTTTCCA 3299 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || || || |||||||||||| ||| |||||| || || ||||| ||| Sbjct 3300 GCGAAAATTAGCCGTTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCCTTG 3359 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 || |||| |||||| | | || || ||||| ||||| ||||| || || Sbjct 3360 ACATTGTCGATGGTGTCGGAAGACTCAACCTCCAAAGTGATAGTCTTTCCAGT 3412 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| ||||| ||||| | ||| || || ||||| || | ||||| Sbjct 1782 AGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCCAATGTTCGGCCATCC 1841 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| |||||||||||||| || || || || ||| ||| Sbjct 1842 TCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCC 1901 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| || | ||||| | | ||| || ||||| || || || Sbjct 1902 TGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCACTTCCAAAGTAATGGTT 1961 Query 199598 TTACCCGT 199605 ||||| || Sbjct 1962 TTACCGGT 1969 >seq16992 Length=3647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| ||||||||||||| |||||||||||||||||| Sbjct 2411 CGAAGACGCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTA 2352 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGA 199502 | || || || ||||| |||||||| | |||| Sbjct 2351 CGACCGTCCTCAAGCTGTTTTCCGGCAACTATGA 2318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178019276617379