Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4656 131 1e-24 seq1158 131 1e-24 seq17959 125 5e-23 seq4816 122 7e-22 seq1300 113 3e-19 seq3790 105 5e-17 >seq4656 Length=9592 Score = 131 bits (144), Expect = 1e-24 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 518488 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 ||||| || | || ||| || | || || || ||||| | ||| ||| |||||| || Sbjct 6530 GTCATCGAATTTTCGACCGATGAGACGCTTGGCGTCAAAGACAGTGTTGTGTGGATTCAT 6471 Query 518548 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 518607 || | || | |||||| ||||| ||||| ||| | |||| || || || | ||| || Sbjct 6470 AGCCACCTGGTTTTTGGCGGCATCGCCAATGAGACGCTCTGAGTCGGTGAAAGCAACGTA 6411 Query 518608 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 518667 || || || ||||| ||||| ||||| || || || ||||||||| |||||||||| Sbjct 6410 AGAAGGGGTGGTGCGGTTACCCTGATCGTTGGCGATGATTTCAACTCGGTCATTTTGCCA 6351 Query 518668 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||| || ||||| | | || || || | ||||||||||||||| Sbjct 6350 TACTCCGACACAGGAATAGGTAGTGCCGAGATCAATACCAATAGC 6306 Score = 96.9 bits (106), Expect = 3e-14 Identities = 196/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||| || ||||| ||||||||||| | | ||| | || | || || | ||| Sbjct 7135 ACGAGACGGTTGTCAAAGTCTTCACCTCCAAGATGAGTGTCACCAGCGGTGGCCTTGACT 7076 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || || | || | ||||| ||||| || ||||| || | ||| Sbjct 7075 TCAAAGATGCCTTCCTCGATAGTGAGAAGAGAAACATCGAACGTCCCACCTCCGAGATCG 7016 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCA 518191 ||||| | ||||| || | | | ||||| || ||||| || |||| ||| Sbjct 7015 AAAATCAAGACATTGCGCTC---GCCAGAGGTCTTTTTGTCCAGACCGTAGGCAATGGCA 6959 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || ||||| || || || || || ||||| || || | || |||||| || || || Sbjct 6958 GCTGCAGTAGGCTCGTTGATGATCCTCAATACGTTCAATCCGGCAATTAAGCCGGCGTCC 6899 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 518301 ||||| ||||| | ||| || || |||||||| || || ||||| | ||| Sbjct 6898 TTAGTTGCTTGACGTTGGGAGTCATTAAAATAGGCTGGGACAGTGACAAC 6849 >seq1158 Length=16965 Score = 131 bits (144), Expect = 1e-24 Identities = 286/426 (67%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || || || ||||| || || |||||| || | ||| || || || | || || ||| Sbjct 11538 TTCGTGATGGTAATTTTGTTCGATTTGCCCGTCGTTTTGTCGGCCGCTGAGACGTTGAGA 11597 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || ||||||||||||| |||||| ||||| || ||||| || || |||| | |||||| Sbjct 11598 ATTCCATTGGCATCCACATCAAAGGTGACCTCGATTTGTGGAACACCTCGTGGCGCAGGT 11657 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | |||| | || || ||||| ||||| ||| | ||||| Sbjct 11658 GGGATTCCAGAAAGTTCAAATTTACCAAGCAGGTTATTGTCTTTGGTGCGTGCACGTTCC 11717 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA-CTCT 517452 || || | | |||||| || ||| ||| || || | || || | || | |||| Sbjct 11718 CCTTCATAGACTTGGATCAATACGCCAGGTTGGTTGTCGGCGTATGTAGAGAAGATCTCT 11777 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||| || ||||| || |||||||| | || | | ||| | | ||| || || Sbjct 11778 -CCTTTCTTCGTAGGAACAGTGGTGTTTCTCTTGATGAGAGGGGTGAAGACACCGCCGGC 11836 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 ||||| | || | ||| || |||| ||| |||| || | | | |||| ||||| Sbjct 11837 CGTTTCAATTCCCATAGAGAGGGGAGCGACGTCAAGGAGTAGGAGGTCTTGAGTCTTTTC 11896 Query 517573 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 || | || || |||||||| || | ||| |||||||||||||| ||||| || Sbjct 11897 TGATGTATCTCCCGTTAGGATAGCTGCCTGCACAGCCGCACCATATGCAACGGCTTCGTC 11956 Query 517633 AGGATT 517638 ||| || Sbjct 11957 AGGGTT 11962 Score = 113 bits (124), Expect = 3e-19 Identities = 197/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||||||||| ||||| || || ||||||| | ||| | || | || ||| | || Sbjct 12470 ACAAGACGATTGTCAAAGTCCTCTCCTCCCAGATGAGTGTCACCGGCAGTCGCTTTGACC 12529 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || || | | | ||| | ||||||| |||||| || |||| ||| Sbjct 12530 TCAAAGATACCTTCCTCGATGGTTAGAAGTGATACATCAAAGGTTCCTCCTCCCAGGTCA 12589 Query 518135 AAAATAAGTACATTCATTTCTTTGTCT-TGGTTTT--TATCAAGACCATACGCAAAAGCA 518191 ||||| | ||| || ||| | | ||||||| | || | ||||| || | ||| Sbjct 12590 AAAATCAATACGTTACGTTC---GCCAGTGGTTTTCTTGTCCAAGCCATAAGCGATGGCA 12646 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 |||||||| || || || || |||| || || || ||||| |||||| || ||||| Sbjct 12647 GCAGCAGTAGGCTCGTTGATGATTCGCAGTACGTTCAGACCCGCAATTAGGCCAGCATCC 12706 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||||||| || | || || ||||| || || || || ||||| Sbjct 12707 TTAGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 12750 Score = 107 bits (118), Expect = 1e-17 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || || || || | ||| ||| || || || ||| | |||| ||||||||||| Sbjct 13097 CGCTTGGCGTCGAAGACAGTGTTGTGGGGGTTCATAGCAACCTGATTCTTGGCTGCATCA 13156 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||||||| | |||| || || |||| || ||||| || || || || ||||| ||| Sbjct 13157 CCAATCAGACGCTCTGAGTCGGTGAATGCCACGTATGAAGGGGTGGTCCGGTTACCCTGA 13216 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || ||||| ||||| ||| | | ||||||||||| || ||||| Sbjct 13217 TCGTTGGCAATGATTTCCACTCGATCGTTTTGCCATACTCCGACACA 13263 >seq17959 Length=3452 Score = 125 bits (138), Expect = 5e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 518488 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAT 518547 ||||| || | || ||| || | ||||| |||||||||||||| || ||| ||||| Sbjct 2991 GTCATCGAATTTTCGACCGATGAGACGTTTGGCATCAAAAATAGTGTTTTGTGGGTTAAT 3050 Query 518548 TG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 518606 | || |||| | |||||| ||||| ||||| ||| | |||| | || || | ||| | Sbjct 3051 GGCCACCTTG-TTTTTGGCGGCATCGCCAATGAGACGCTCTGAGTTGGTGAAAGCAACGT 3109 Query 518607 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 518666 | || || || ||||| ||||| ||||| || || || || |||||| ||||||||| Sbjct 3110 AAGAAGGTGTGGTGCGGTTACCCTGATCGTTGGCGATGATCTCAACTCGGTCATTTTGCC 3169 Query 518667 ATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 |||| || ||||| | | | || || | ||| ||||||||||| Sbjct 3170 ATACTCCGACACAGGAATAGGAAGTACCGAGATCGATACCAATAGC 3215 >seq4816 Length=9410 Score = 122 bits (134), Expect = 7e-22 Identities = 481/751 (64%), Gaps = 22/751 (3%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 |||| ||| ||||| | ||| ||||| || ||||||||||| ||||| |||| | | | | Sbjct 2604 AGAACAGCAGCTTGCACAGCGGCACCGTACGCAACAGCTTCGTCAGGGTTAATACTCTTA 2545 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 517708 || |||| ||| |||||||| |||| ||| | | ||| ||||| || | | Sbjct 2544 TTCAGTTGACGCCCACCGAAAAAATCCGAAACAAGGGATTGGATCTTGGGAATTCGCGTT 2485 Query 517709 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 517768 ||||| ||||| | |||||| || | |||| ||| || || | ||| | ||| | Sbjct 2484 GATCCACCAACAAGTACAATGTCCTCGACCTTTGACTTGTCAATTTTGGCGTCCTTGAGC 2425 Query 517769 ACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC--AAAGTTCTTCGAATT 517826 ||||| || || || |||||| | | | | || || | | |||||||||| Sbjct 2424 ACTTTGTCTACAGGATCAAGAGTAGAACGGA--ATGTTTGCGCGTTGATTTCTTCGAATC 2367 Query 517827 TAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCG 517886 |||| | || | | | |||| | |||| ||| | |||||| || || | | Sbjct 2366 GGGCTCGGGAAATTGCCGAAGAAAAATCGGTGCCTTGGAAAAGAGAATCGACCTCGACGG 2307 Query 517887 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 517946 ||||||||||| || || || | || || || |||||||| |||| | || | | Sbjct 2306 TAGTTTGAGTCACTGAGGAGAGGGTTCGCTTGGCTCGTTCACAAGCTGAACGGAGGCGAC 2247 Query 517947 GTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATC-TTCAACA 518005 | | ||| || || | || || ||||| |||||| || ||| | Sbjct 2246 GGAGGGCCCGGGCGTCACCATCAATGTCAAGCTTGGTTTTTCGCTTGAACTCATTCTTGA 2187 Query 518006 CACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 518063 ||||| | |||| ||| ||||| || || |||||||| | ||| | |||| | Sbjct 2186 ---AATGTTCGAGAAGAGCATTGTCAAAGTCCTCGCCTCCCAAGTGAGTGTCACCTGCAG 2130 Query 518064 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCAC 518123 | ||| | || || | ||| | | | || | |||| |||||| || |||| Sbjct 2129 TGGCTTTGACCGTAAAGACGCCACCAGCGATGGAAAGGAGAGAAACATCAAAAGTGCCAC 2070 Query 518124 CACCCATATCAAAAATAAGTACA-TTCATT--TCTTTGTCTTGGTT---------TTTAT 518171 | || | |||||| || | ||| ||| || | ||| |||| || || | Sbjct 2069 CTCCTAGATCAAAGATCAACACAGTTCTTTCCTTTTTTTCTTTTTTGTCGCCAGCTTCAC 2010 Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 | | |||||| || | || || ||||||||||||||||| || | | || | || | Sbjct 2009 CCAAACCATAGGCGATTGCGGCGGCAGTTGGTTCATTAATGATACGGAGCACGTCCAGCC 1950 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 |||| || || ||||| || |||| | | || ||||| || || || ||||| | Sbjct 1949 CAGCGATAGCACCGGCATCCTTTGTGGACAGCCGCTGAGAATCATTGAAGTAAGCAGGCA 1890 Query 518292 CAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | || || ||||| | | ||||| || || Sbjct 1889 CCGTGATGACGGCCTTCTTGACTTCCTTGCC 1859 >seq1300 Length=16371 Score = 113 bits (124), Expect = 3e-19 Identities = 308/466 (66%), Gaps = 18/466 (4%) Strand=Plus/Minus Query 303735 AAGTCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCC 303794 ||||||||| ||||| || |||||||| | |||||| || | | || || || Sbjct 15426 AAGTCCACCGTCTCTAGACCTACCTTCAACAGGTTGTCTAGTTAAAATTTGAACAGGACC 15367 Query 303795 ACGAGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGG 303854 |||||| | ||||| || || ||||| ||||| ||||| |||||||| || || Sbjct 15366 ACGAGCTCTAGAGTGAATTTTATCATTAACCATATGTTTTAATCTTTGATAATAAGTAGG 15307 Query 303855 ACCAATAAAAATTTTAACTGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATT 303914 ||| | | || || | || ||||||||||||| | |||||| ||||| |||| Sbjct 15306 ACCTAAATAACATTGAGCTCTTAATTTTTTACCAGTATGACCATTAAACATAATTTCTAA 15247 Query 303915 ACCCCATTCTTCATAACCAGCAGCAACTAATTCATCGTT--AATGGCATTAAGATCAACA 303972 ||| | | ||||||| ||| ||| || ||| || | || | ||| Sbjct 15246 ACCTCTAGAATGATAACCACTTTTTTTTAA--CATATTTGAAATTGCTTCAACAGTTACA 15189 Query 303973 CTTGTAAATGGTGTTGCATCGCCATACACTCCTTTAACTGCACATAGTTTTCCTAATAAA 304032 |||| ||||||||||| || | ||||| | || | ||| ||| | ||||||| Sbjct 15188 TCACTAAAAGGTGTTGCATCCCCTTCATTTCCTTCTATTGTAGATACTTTACTTAATAAA 15129 Query 304033 CATTCAATAAGTTGCCCAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAATA 304092 ||||||| | || ||||| ||||| ||| || || || |||||||| || | | Sbjct 15128 CATTCAACTAAATGTCCAATTGTCATTCGTGATGGTATGGCATGTGGATTGATTATTACA 15069 Query 304093 TCGGGA---ATTAATCCAGATTTACTGAATAACATATCTGC---TCGATGAGCTTTGTAT 304146 || ||| ||| | | ||| || ||| ||||||| | || || | |||| Sbjct 15068 TCTGGACATATTCCTTCTGATGTA---AATGGCATATCTTCTTGTCTATAA----AGTAT 15016 Query 304147 -CCAATGGTACCTTTTTGACCTGCTCTTGACGAAAATTTATCACCT 304191 |||| || |||||||| || ||| || | ||||||||| ||| Sbjct 15015 ACCAACAGTTCCTTTTTGTCCATGTCTAGATGCAAATTTATCTCCT 14970 >seq3790 Length=10706 Score = 105 bits (116), Expect = 5e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 629841 GATTCAGTTGTCAATCAATTTTTAGCTGAAATGGATGGATTGGAGGTTTTCAATAACCTT 629900 |||||||| ||||||||||| ||| || ||||||||||| |||| || ||||| || Sbjct 9153 GATTCAGTGGTCAATCAATTATTATCTAAAATGGATGGAGTGGATCAATTAAATAATATT 9212 Query 629901 ATTTGCATTGGAATTACTAATAGATTGGAATTACTTGATCCAGCAACAATTAGATCGGGT 629960 | |||||||| |||||| |||| || | ||||| ||| | | ||| | ||| Sbjct 9213 TTAATTATTGGAATGACTAATCGATTAGATATGATTGATGAAGCTTTACTAAGACCAGGT 9272 Query 629961 CGATTTGGAATTCACATTAAAATCGATTTACCGGATCAAGAAGGTCGAGTTAAAATTTTC 630020 ||||| | | |||| || ||||| ||||| ||| || | ||||| | ||||||| Sbjct 9273 CGATTAGAAGTTCATATGGAAATCTCATTACCTGATGAAAAGGGTCGTTTACAAATTTTA 9332 Query 630021 CAAATTCATAC 630031 | |||||||| Sbjct 9333 AACATTCATAC 9343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777858053286322