Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq122 140 4e-28 >seq122 Length=30057 Score = 140 bits (154), Expect = 4e-28 Identities = 214/298 (72%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 153731 AGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTA-TGCAAAGGTTTGGTATTCCTATGG 153789 |||||| ||||| |||||| ||| | |||| || ||| | | |||||| | ||| | | Sbjct 25358 AGGTGAATGGGGTGCTGATATAGCTTTTGGTAATAGTGCTA-GATTTGGTGTACCTTTAG 25300 Query 153790 GATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAA-GAGAAAGATA 153848 | ||||| |||||||||||||||||||||| | || ||| | | ||| | || || Sbjct 25299 GTTATGGTGGTCCTCATGCTGCATTCTTTGTAGTAAAAGA-ATCTTTAACTCGTAAAATT 25241 Query 153849 CCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCA 153908 ||||| ||| | |||||| ||| ||||| | | ||||| ||||| |||||| | Sbjct 25240 CCTGGTAGATTAATAGGTCTTTCAAAAGATATTAATGGTAAACCTGCATATAGATTAACC 25181 Query 153909 CTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA--ACCAGTAACATCTGCACAG 153966 |||| |||||||| || || || || ||||| |||||| | || ||| | || ||| Sbjct 25180 TTACAAACTAGAGAACAACACATTAGAAGAGATAAAGCATTATCA--AACGTTTGTACAT 25123 Query 153967 CTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGG 154024 |||| ||| | | || ||| | || ||| ||||||| ||||| ||| || |||| Sbjct 25122 CTCAAGCATTATTAGCAAATTTAGCTTCATTTTATGCAGTTTATCACGGTCCAAATGG 25065 Score = 132 bits (146), Expect = 6e-26 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 |||||||||||||| || ||||| |||||||||||||| || | || | | ||| Sbjct 23804 ATTATGATTACATATCCTTCTACTTATGGTGTATTTGAAGCTCATGTTCAAGATGCTTGT 23745 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 | || ||||| ||||||||||||| || | ||||| || ||| | || ||||| Sbjct 23744 GAAATTATTCATCGATATGGTGGTCAGGTTTACATGGATGGTGCTAATATGAACGCACAA 23685 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 | ||| | | || ||| ||| ||| || ||||| |||||| |||| ||||| || Sbjct 23684 ATTGGATTGACTAATCCAGTAAAGTGTGGAGCTGATGTTTGTCATTTAAATTTACACAAG 23625 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAA 155111 || || | ||||| |||||||| ||||| || || || || || || || |||||| | Sbjct 23624 ACCTTTGGAATTCCGCATGGAGGAGGAGGACCGGGAGTGGGACCAATCGGAGTAGCATCA 23565 Query 155112 CAT 155114 ||| Sbjct 23564 CAT 23562 Score = 114 bits (126), Expect = 1e-20 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 |||||| |||||| || ||| ||||| |||||| | ||||| |||||||| ||||| Sbjct 25834 AATCCTGCTTGGTATACTAGTTATACTCCTTATCAACCAGAGATTTCTCAGGGTAGATTA 25775 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTT--ACAGGATTACCAATAGCAA 153384 ||| | ||| | |||| ||||| | | | | ||| || || ||||| ||||| | Sbjct 25774 GAATCATTAATTAATTTTCAAACTATGGTTA--GCTCTTTAACTGGTTTACCTATAGCTA 25717 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATATAAT 153443 | |||||| ||||||| |||| ||||| ||||||||||| ||| ||| |||||||| Sbjct 25716 ATGCATCTTTATTAGACGAAGGTACTGCTGCAGCAGAAGCTATGACTTTATCATATAAT 25658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578780294562080