Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq122 145 9e-30 >seq122 Length=30057 Score = 145 bits (160), Expect = 9e-30 Identities = 266/380 (70%), Gaps = 10/380 (3%) Strand=Plus/Minus Query 159415 CATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGT 159474 ||||| || ||||| ||||||||||| |||||||| |||||||| | | || | Sbjct 23936 CATGGTACAAATCCAGCATCAGCAGTCATGGCAGGAATGAAAGTCATTCCAATTAAAACT 23877 Query 159475 GATGAT-GATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATA-CAT 159532 |||| |||||| |||| | ||||| |||| ||||| ||| |||| || Sbjct 23876 -ATGAAAGATGGCTCATTAGATTTAGAAGATTTAGAATCAAAAGCT-TCAA-AATATCAG 23820 Query 159533 T-TGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAAC 159591 |||| | | ||||||||||||||||| ||||| |||||||||||||| | | Sbjct 23819 AATGAATTAGCCGCGATTATGATTACATATCCTTCTACTTATGGTGTATTTGAAGCT--C 23762 Query 159592 ATCAGACAGATA--TGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTG 159649 || |||| ||| | ||| ||||| ||||||||||||| || | ||||||| Sbjct 23761 ATGTTCAAGATGCTTGTGAAATTATTCATCGATATGGTGGTCAGGTTTACATGGATGGTG 23702 Query 159650 CAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTC 159709 | ||| | || ||||| | || | | || ||| | | ||| || ||||| |||| Sbjct 23701 CTAATATGAACGCACAAATTGGATTGACTAATCCAGTAAAGTGTGGAGCTGATGTTTGTC 23642 Query 159710 ATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTC 159769 || |||| ||||| ||||| || | ||||| |||||||| ||||| || || || || | Sbjct 23641 ATTTAAATTTACACAAGACCTTTGGAATTCCGCATGGAGGAGGAGGACCGGGAGTGGGAC 23582 Query 159770 CTATTGGTGTAGCAAAACAT 159789 | || || |||||| |||| Sbjct 23581 CAATCGGAGTAGCATCACAT 23562 Score = 125 bits (138), Expect = 8e-24 Identities = 211/298 (71%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 158406 AGGTGAGTGGGGATTTGACATTGCTGTAGGTAGTA-TGCAAAGGTTTGGTATTCCTATGG 158464 |||||| ||||| ||| || ||| | |||| || ||| | | |||||| | ||| | | Sbjct 25358 AGGTGAATGGGGTGCTGATATAGCTTTTGGTAATAGTGCTA-GATTTGGTGTACCTTTAG 25300 Query 158465 GATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAA-GAGAAAGATA 158523 | || || |||||||||||||||||||||| | || ||| | | ||| | || || Sbjct 25299 GTTATGGTGGTCCTCATGCTGCATTCTTTGTAGTAAAAGA-ATCTTTAACTCGTAAAATT 25241 Query 158524 CCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCA 158583 ||||| ||| | |||||| ||| ||||| | ||||| ||||| |||||| | Sbjct 25240 CCTGGTAGATTAATAGGTCTTTCAAAAGATATTAATGGTAAACCTGCATATAGATTAACC 25181 Query 158584 CTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA--ACCAGTAACATCTGCACAG 158641 |||| |||||||| || || || |||||||| |||||| | || ||| | || ||| Sbjct 25180 TTACAAACTAGAGAACAACACATTAGAAGAGATAAAGCATTATCA--AACGTTTGTACAT 25123 Query 158642 CACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGG 158699 | |||||| | | || ||| | || || ||||||| ||||| ||| || |||| Sbjct 25122 CTCAAGCATTATTAGCAAATTTAGCTTCATTTTATGCAGTTTATCACGGTCCAAATGG 25065 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||||| || ||| ||||| |||||| | ||||| |||||||| ||||| Sbjct 25834 AATCCTGCTTGGTATACTAGTTATACTCCTTATCAACCAGAGATTTCTCAGGGTAGATTA 25775 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 ||| | ||| | |||| ||||| | | | | || || |||| ||||| || Sbjct 25774 GAATCATTAATTAATTTTCAAACTATGGTTAGCTCTTTAACTGGTTTACCTATAGCTAAT 25715 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATATAAT 158118 |||||| ||||||| |||| ||||| ||||||||||| ||| ||| |||||||| Sbjct 25714 GCATCTTTATTAGACGAAGGTACTGCTGCAGCAGAAGCTATGACTTTATCATATAAT 25658 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 159022 TTACAACAAGAGGTATTTAAAAAATATCATAGTGAGACTGACATGATGAGATATATCTAT 159081 |||||||| | |||||||| |||||| ||| ||||| | ||||||||||| || Sbjct 24523 TTACAACATGCTGTATTTAATCGTTATCATTCTGAAACTGAATTAATGAGATATATTCAT 24464 Query 159082 GAGTTAGCATCAAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACT 159141 ||| | |||||||| || |||||| || ||||| | || ||||| ||||||| Sbjct 24463 TCTTTACAAAAGAAAGATTTATCCTTAGTAGATAGTATGATCCCTCTTGGATCTTGTACT 24404 Query 159142 ATGAAACTAAACGCAGC 159158 |||||||| || |||| Sbjct 24403 ATGAAACTTAATTCAGC 24387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587612094818320