Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12400 111 2e-19 >seq12400 Length=4870 Score = 111 bits (122), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || ||||| ||||||||||| | |||||| | || || ||||| | | ||||| || Sbjct 1972 ATTTGAAAGCCGTAAAAACAACGTGCTTCCGCAATTTGAACTTCTCCGCTGAATCTCTCA 2031 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 | | ||| ||||| || || ||||| || || || ||||| | ||||| ||||| Sbjct 2032 ATTAGATTCTCATTGACGATGCCATCTGAGGCAGCGAAGAATGCAAGAACATGCTTAATG 2091 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATT---CCAATCATTAATATCTTTAGATAAATCT 19461 |||||||| || || | ||| | | || |||||| | || |||||||||| ||| Sbjct 2092 AAATGTTTCTCGTCCGCATTTAGTTTTTTGTCCCAATCGTGCATGTCTTTAGATAGATCA 2151 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 | |||||| | |||||||| ||||| || || Sbjct 2152 ATTTCTTCCGCCGTCCAAAACGAAGCTTCGGC 2183 Score = 86.0 bits (94), Expect = 7e-12 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 |||||||| || | |||| ||| | ||||||| || ||||||| ||| || | || Sbjct 1284 TTCATTCCAATGAGTTTACAAGGCAAGGCATCTGAGAGGAATTCTTTTTCAATCTCAACG 1343 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 |||| | || || | | ||| | ||| | |||| | || || ||| Sbjct 1344 GCCTGGGCAATGATTGCTTGAACGGTGTCTGGGTGAGGACGACGCTCGAGGTGAGAGAAC 1403 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 | | |||||| ||||| ||| || || ||||| | ||||| ||||| ||||| Sbjct 1404 AAAAGACATGCGAAATCGGTATGAAGCCCTTCGTCCCGGGAAATCAACTCATTGGAAAAC 1463 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 || || |||||||||| || | ||| || | |||||| || |||||||||||||| || Sbjct 1464 GTCAATCCAGGCATCAAACCACGTTTCTTGAGCCAGAAAATGGAAGCAAATGATCCTAAA 1523 Query 19075 AAGAA 19079 || || Sbjct 1524 AAAAA 1528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561689066332680