Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq195 95.1 2e-14 seq12400 89.7 1e-12 >seq195 Length=27450 Score = 95.1 bits (104), Expect = 2e-14 Identities = 316/489 (65%), Gaps = 12/489 (2%) Strand=Plus/Plus Query 213111 TTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAG 213170 |||||||||||||||||||| || | |||||||| || |||| ||| | ||| Sbjct 4881 TTCACGTTCCACATGTCAAATTGAAGGATGCCTTGACTTGCGGGTGAGCCTGGAAAAGTC 4940 Query 213171 GAGTAGGGGCCATGCTCCTTG---GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 || ||||| ||| || |||| ||| ||| |||| || || || | || Sbjct 4941 TCATAAGGGCC---GTCCCTGAGAGCCAACTCATTGGAAGCCTCTAGAGCTGCATGATAT 4997 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATC 213287 | |||||||| |||| | ||||| ||||||| || | || || || | | || Sbjct 4998 AAAGTTTCAAAAATCTGAATATTGAGTCTCTTGGCTTCAAGCGAATCAAACGGAAGCTTC 5057 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 | || || ||||||| ||||| || ||||| ||||| || || | |||||||| | Sbjct 5058 AAAATCTGAAATGCATCAGCTAGCCCTTGAACCCCAATGCCAATCGGGCGGTGTCTCATG 5117 Query 213348 TTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 || || || |||| || |||||| | || || ||||| ||||| | ||| Sbjct 5118 TTCGATTTTTTTGCCTCCGGCACTGGGTAATAATTTATATCAATGATTTTGTTCAAATTG 5177 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 |||| | | ||||| |||| || | | | | | ||| ||||| || ||| Sbjct 5178 TGGGTAACTTCCTTGGTAACAT----CATGGAGT--TTTTGGAAGTCGTAGTTTCCATCC 5231 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | | | || ||||| || |||| ||| ||||| ||||| || | || | Sbjct 5232 ACGATATATGTCGGTAGGGCAATAGATGCCAAGTTACAAACTGCCACTTCATCAGGCGCA 5291 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 | ||||| || || || ||||| || ||| | || ||| || || ||||| | ||| Sbjct 5292 GAATACTCGATAATTTCCGTGCAAAGATTGGAGGATTTGATAGTTCCAAGGTTTTTCTGG 5351 Query 213588 TTTGACTTT 213596 || || ||| Sbjct 5352 TTCGATTTT 5360 >seq12400 Length=4870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || |||||| | ||||||||| | |||||||||||||| || |||||||| ||||| Sbjct 2008 TGAACTTCTCCGCTGAATCTCTCAATTAGATTCTCATTGACGATGCCATCTGAGGCAGCG 2067 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGT 48587 ||||| ||||| ||||| |||| |||||| ||||| Sbjct 2068 AAGAATGCAAGAACATGCTTAATGAAATGTTTCTCGT 2104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930837212814080