Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7505 122 2e-22 >seq7505 Length=7180 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | |||| ||| | ||| | |||||| || |||||||| | |||||||| Sbjct 1776 AGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCCAATGTTCGG 1835 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| || | |||||||||||| || || | | ||| |||||||| || || || ||| Sbjct 1836 CCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGGATGCCCTCT 1895 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || |||||| || ||||| || | || |||||||| ||||| | |||| Sbjct 1896 TTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCACTTCCAAAGTA 1955 Query 192499 ATGGTTTTACCAGTTAA 192515 ||||||||||| || || Sbjct 1956 ATGGTTTTACCGGTCAA 1972 Score = 116 bits (128), Expect = 7e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCG 192377 ||||| | || | ||| ||||||| || ||| || || || ||||||| || || || Sbjct 2933 AGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGA-ATGTTGTAATCAGCTAGGGTACG 2991 Query 192378 TTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTC 192437 |||| || | |||||||||||||||||| |||| ||| ||||| ||||| || ||||| Sbjct 2992 GCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTC 3051 Query 192438 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGT 192497 || ||||| || || || |||||| || | ||| || ||||| || || || || Sbjct 3052 CTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAACCTCGAGTGT 3111 Query 192498 AATGGTTTTACCAGTTAA 192515 ||| || || || ||||| Sbjct 3112 AATAGTCTTGCCGGTTAA 3129 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| || || | ||| || || | || || ||| || ||||| Sbjct 2348 ATACCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCT 2407 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | ||| ||||| ||||||||||||| ||||| |||||| Sbjct 2408 GCGAGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGT 2467 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || |||||||||| || | || |||||||| Sbjct 2468 GGAATACCTTCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCG 2527 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || || || || || || ||||| Sbjct 2528 ACCTCAAGCGTTATTGTCTTCCCAGT 2553 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || ||||||| ||| || ||| || || || Sbjct 3495 ATACCACCGCGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCT 3554 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | ||| |||||||||||||| || | || || ||||| Sbjct 3555 GCAAGGGTACGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGA 3614 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || ||| || | ||||| || || Sbjct 3615 GGGATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCG 3674 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||||| || || || || || |||||||| Sbjct 3675 ACTTCAAGGGTGATTGTCTTCCCAGTTAA 3703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983726498389950