Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7505 118 2e-21 >seq7505 Length=7180 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 |||| ||| | ||| | |||||| ||| |||||||||| || | ||| | || || Sbjct 1785 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGCCAATGTTCGGCCATCCTCA 1844 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | |||||||||||| ||||| | | ||| || ||||| || || || ||||| || || Sbjct 1845 AGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGGGATGCCCTCTTTGTCCTGA 1904 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 |||||| || ||||| || || || |||||||| ||||| | ||||||||||||| Sbjct 1905 ATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCACTTCCAAAGTAATGGTTTTA 1964 Query 172041 CCAGTTAA 172048 || || || Sbjct 1965 CCGGTCAA 1972 Score = 102 bits (112), Expect = 1e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || || || | ||| || || | || || || || |||||| Sbjct 2348 ATACCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCT 2407 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | ||| ||||| ||||| ||||||| |||||||||||| Sbjct 2408 GCGAGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGT 2467 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || |||||||||| || || || |||||||| Sbjct 2468 GGAATACCTTCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCG 2527 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGT 172045 || || || || || || || ||||| Sbjct 2528 ACCTCAAGCGTTATTGTCTTCCCAGT 2553 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| ||||||| || || ||| || ||||| | || | || | || || | ||| Sbjct 2947 ATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCTAGGGTACGGCCATCTTCTAGTTG 3006 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||||||| || |||| ||| || || ||||| || ||||| || ||||| || || Sbjct 3007 TTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTT 3066 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 || |||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 3067 TGCCTTGACATTATCAATCGTATCGGAGGATTCAACCTCGAGTGTAATAGTCTTGCCGGT 3126 Query 172046 TAA 172048 ||| Sbjct 3127 TAA 3129 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | || ||||||| ||| || || || || ||| Sbjct 3495 ATACCACCGCGAAGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCT 3554 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| ||||||||||| || || | || |||||||| Sbjct 3555 GCAAGGGTACGTCCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGA 3614 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || || ||| || || ||||| || || Sbjct 3615 GGGATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCG 3674 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 ||||| || || || || || |||||||| Sbjct 3675 ACTTCAAGGGTGATTGTCTTCCCAGTTAA 3703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904460123634600