Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq55921 123 7e-23 seq8307 118 3e-21 seq56302 107 6e-18 seq4905 107 6e-18 seq3695 93.3 1e-13 seq1300 86.0 2e-11 >seq55921 Length=1058 Score = 123 bits (136), Expect = 7e-23 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 60143 GTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGT 60202 || ||||||||||| || | ||||| || || |||||| | ||| || |||||||| Sbjct 378 GTAAAAATATACCTTTCCAAGGCTGCATCTTTACCACCCGAAGCACGAGTACCAAATTGC 437 Query 60203 CCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACA 60262 || || || | | ||| || || ||| || || ||||||||||| | |||||| Sbjct 438 CCATTGGGGGACAGAATATTGATATTATTACTTCCGACAAAATTTTGAGCCAAGCCAACA 497 Query 60263 ATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCA 60322 || | |||| ||||||||||||||||| || | || ||||| ||| ||||||| Sbjct 498 ATTGTTTGCGTTAAGCTGGCTTCACCGTGATGGTAAGCTGAGTGTTCAGAACAATATCCA 557 Query 60323 CTGAATTGTGCGACTTTAATTTCGGAGTGGAGTTTTTTCTTGAACGCCGAATATACAATT 60382 | |||||||| ||||| ||||| | | | |||| | ||||| ||| | | || | Sbjct 558 CCTAATTGTGCCACTTTGATTTCCGCCTTCAATTTTCTTTTGAAACAAGAAAACAAAACT 617 Query 60383 TTCCTCAAACTGATTTTAAGACCATC 60408 || || || | ||||| |||||| Sbjct 618 TTTCTTTGACCGGGTTTAAAACCATC 643 >seq8307 Length=6684 Score = 118 bits (130), Expect = 3e-21 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 60143 GTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGT 60202 || ||||||||||| || | ||||| || || |||||| | ||| || ||||||| | Sbjct 5327 GTAAAAATATACCTTTCCAAGGCTGCATCTTTACCACCCGAAGCACGAGTACCAAATT-T 5269 Query 60203 CCGTTTGGCTG---GAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || |||| | ||||| || || || ||| || || ||||||||||| | ||| Sbjct 5268 CCCATTGGGGGACAGAATA--TTGATATTATTACTTCCGACAAAATTTTGAGCCAAGCCA 5211 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 ||||| | |||| ||||||||||||||||| || | || ||||| ||| |||| Sbjct 5210 ACAATTGTTTGCGTTAAGCTGGCTTCACCGTGATGGTAAGCTGAGTGTTCAGAACAATAT 5151 Query 60320 CCACTGAATTGTGCGACTTTAATTTCGGAGTGGAGTTTTTTCTTGAA 60366 |||| |||||||| ||||| ||||| | | | |||| | ||||| Sbjct 5150 CCACCTAATTGTGCCACTTTGATTTCCGCCTTTAATTTTCTTTTGAA 5104 >seq56302 Length=1051 Score = 107 bits (118), Expect = 6e-18 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 60143 GTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGT 60202 || ||||||||||| || | ||||| || || |||||| | ||| || ||||||| | Sbjct 956 GTAAAAATATACCTTTCCAAGGCTGCATCTTTACCACCCGAAGCACGAGTACCAAATT-T 898 Query 60203 CCGTTTGGCTG---GAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || |||| | ||||| || || || ||| | || ||||||||||| | ||| Sbjct 897 CCCATTGGGGGACAGAATA--TTGATATTATTACTTCTGACAAAATTTTGAGCCAAGCCA 840 Query 60260 ACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 ||||| | |||| |||||||||||||||| || | || ||||| ||| |||| Sbjct 839 ACAATTGTTTGCGTTAAGATGGCTTCACCGTGATGGTAAGCTGAGTGTTCAGAACAATAT 780 Query 60320 CCACTGAATTGTGCGACTTTAATTTCGGAGTGGAGTTTTTTCTTGAACGCCGAATATACA 60379 |||| ||| |||| ||||| ||||| | | | |||| | ||||| | | | | | Sbjct 779 CCACCTAATGGTGCCACTTTGATTTCCGCCTTCAATTTTCTTTTGAAACAAGCAAACAAA 720 Query 60380 ATTTTCCTCAAACTGATTTTAAGACCATC 60408 | ||| || || || ||||| |||||| Sbjct 719 ACTTTTCTTTGACCGAGTTTAAAACCATC 691 >seq4905 Length=9298 Score = 107 bits (118), Expect = 6e-18 Identities = 203/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 60110 GGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCTGCG 60169 ||||| || | ||| |||| || || | || ||||||||||| | || ||||| Sbjct 5418 GGAAAGATGACTCGATTAATTTTCTCCAAGTTAGTAAAAATATACCTTGCCGAGGCTGCA 5477 Query 60170 TCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTG 60229 || || |||||| | || || |||||||| || || || | | ||| || || Sbjct 5478 TCTTTACCACCCGAAGCACAAGTACCAAATTGCCCATTGGGGGACAGAATATTGATATTA 5537 Query 60230 TTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGCTTCACCG 60289 ||| || || ||||||||||| | |||||||| | |||| |||||||||| Sbjct 5538 TTACTTCCGACAAAATTTTGAGCCAAGCCAACAATTGTTTGCATTAAGATGGCTTCACCA 5597 Query 60290 TGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTTCGGAG 60349 ||||| || | || ||||| ||| |||||||| |||||||| | ||| ||||| | Sbjct 5598 TGATGGTAAGCTGAGTGTTCAGAACAATATCCACCTAATTGTGCCATTTTGATTTCTGCC 5657 Query 60350 TGGAGTTTTTTCTTGAACGCCGAATATACAATTTTCCTCAAACTGATTTTAAGACCATC 60408 | | |||| | ||||| | | | | || ||| || || | |||||| |||||| Sbjct 5658 TTCAATTTTCTTTTGAAACAAGCAAACAAAACTTTTCTTTGACCGGTTTTAAAACCATC 5716 >seq3695 Length=10532 Score = 93.3 bits (102), Expect = 1e-13 Identities = 210/314 (67%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||||| |||| |||||||||||| || || |||||| || |||||| Sbjct 5310 CATTACGTCTTCCAGGGCTTTGAGTAAACGACGCTGGATGTACCCAGTTTCAGCTGTTTT 5369 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| | ||| | ||||| ||||||| || || || | ||||| || Sbjct 5370 CACCGCGGTATCAATCAAACCTTCTCGACCTGCCATAGCGTGAAAAAAGAACTCTTGAGG 5429 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | | | || | || || || || |||| ||||| || | || Sbjct 5430 AGTCAGTCCTCGTAAGTAAGAATTTTCGACAAATCCCCGCGATTCGGGTGAGTAATCATC 5489 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || || || || | | || | || ||||| ||||| ||||| || || Sbjct 5490 TTTGGTGAAATGAGGTAGAGTTCGATACTTGAATCCATATGGAATACGTTTTCCTTCTAC 5549 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAG 302862 ||||| || | |||| ||| || |||||||| ||||| | || || || Sbjct 5550 AGATTGCTGACCGACACACGCTGACATTTGGGAAATATTAATAAATGA--TCCTTTAGAA 5607 Query 302863 CCAGCATTTACCAT 302876 ||||| | ||||| Sbjct 5608 CCAGCTGTGACCAT 5621 >seq1300 Length=16371 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/177 (72%), Gaps = 10/177 (6%) Strand=Plus/Minus Query 233607 CTTTACCCATTAAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTG 233666 |||||| | |||| ||| | || || || || ||||||| ||||| || |||| Sbjct 15142 CTTTACTTAATAAACATTCAACTAAATGTCCAATTGTCATTCGTGATGGTATGGCATGTG 15083 Query 233667 GATTGATAATTAAATCTGGACGTACTCCCTCCGATGTAAAAGGCATATCTTTTTCAGGGA 233726 ||||||| |||| |||||||| || ||| || |||||||| |||||||||| || | Sbjct 15082 GATTGATTATTACATCTGGACATATTCCTTCTGATGTAAATGGCATATCTTCTT----GT 15027 Query 233727 TTAT-CAGT---CCAACTGTTCCCTTTTGGCCGCATCTA-CTACAGAATTTATCACC 233778 ||| ||| ||||| ||||| ||||| || |||| | || |||||||| || Sbjct 15026 CTATAAAGTATACCAACAGTTCCTTTTTGTCCATGTCTAGATGCA-AATTTATCTCC 14971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470691099785369