Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7505 131 1e-25 >seq7505 Length=7180 Score = 131 bits (144), Expect = 1e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||| | ||| | || ||||| ||||||||||| ||||| || Sbjct 2924 CCTCCACGTAGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCT 2983 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || |||||||| |||||| | ||||||| |||||||| || ||| Sbjct 2984 AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 3043 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | ||| |||||| | || | || || || ||| || Sbjct 3044 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAACC 3103 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || || || ||||| ||||| |||||| Sbjct 3104 TCGAGTGTAATAGTCTTGCCGGTTAAG 3130 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || | |||||| || || |||||||||||||||||||| || Sbjct 1766 TCCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGC 1825 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || |||||||| ||||| | || | | |||||||| ||||| Sbjct 1826 CAATGTTCGGCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCGG 1885 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||||||||| || |||||| | || ||| | || | |||||||| ||| | Sbjct 1886 GATGCCCTCTTTGTCCTG-AATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCA 1944 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 |||| | ||| || ||||| || || ||| | || | ||| Sbjct 1945 CTTCCAAAGTAATGGTTTTACCGGTCAAGCTGTTGAGAAA 1984 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || || |||| ||| | || ||||| || |||||||| |||||||| Sbjct 3210 CCACCTCGCAAGCGTAGTACCAGATGCAAGGTCGATTCCTTCTGAATGTTGTAATCCGCT 3269 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| |||||||| || ||||| | || | | |||||| ||||| ||| Sbjct 3270 AAGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAAATTAGCCGTTGCTGGTCCGGAGGA 3329 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | || | ||||| ||| || || Sbjct 3330 ATGCCTTCTTTGTCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACC 3389 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || | ||| ||||| || ||||| ||| Sbjct 3390 TCCAAAGTGATAGTCTTTCCAGTCAAG 3416 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || |||||||| |||||||||||||| |||| || ||| ||| Sbjct 2078 AGGACGAGATGAAGAGTAGATTCTTTCTGAATGTTATAATCAGCAAGAGTTCGACCATCT 2137 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||||| || ||| | || | | ||| |||||||| ||||| |||||||||||| Sbjct 2138 TCCAACTGTTTACCCGCAAAAATGAGCCGTTGTTGATCCGGAGGAATGCCCTCTTTGTCT 2197 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | ||| || | || | ||||| || || |||||||| || ||||| Sbjct 2198 TG-AATCTTGGCTTTAACGTTATCGATGGTGTCGGAGGACTCAACTTCAAGGGTGATAGT 2256 Query 29754 TTTGCCAGTTAA 29765 || || || || Sbjct 2257 CTTCCCGGTCAA 2268 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||||||| || || | |||||| || ||||| ||||||||||| ||||| || Sbjct 3787 CCACCTCTCAAACGAAGAACGAGATGAAGAGTTGATTCCTTTTGAATGTTGTAATCAGCG 3846 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCA 29652 | |||||| ||| ||||||||||| || ||| Sbjct 3847 AGAGTGCGACCATCCTCGAGTTGTTTTCCGGCA 3879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384938743207917