Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1300 107 2e-18 seq4777 95.1 2e-14 >seq1300 Length=16371 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 193439 ACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTG 193497 ||||||||| |||| ||| ||||||||| || || |||| | ||||||||||| || Sbjct 14955 ACGTATACCAGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGAACTGTTG 15013 Query 193498 GTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTA 193557 |||| ||||| |||||||||||||||||||||| | ||| || |||||| | | Sbjct 15014 GTATACTTTATAGACAAGAAGATATGCCATTTACATCAGAAGGAATATGTCCAGATGTAA 15073 Query 193558 TTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 | || |||||| || || ||||| ||||||| ||| Sbjct 15074 TAATCAATCCACATGCCATACCATCACGAATGACAATT 15111 >seq4777 Length=9450 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 193414 TAGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCAG 193473 |||| |||||| || | | || | | | ||||||| | || |||||||| | ||| Sbjct 4995 TAGTCAAAGTTCTTTTAAGACAAACAAGAAGACCTGAACTTGGTGATAAATTCTCTTCTA 4936 Query 193474 GA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACA 193532 || |||| | |||||||| ||||||| | ||| | ||||||||||||||| |||| Sbjct 4935 GACATGGTC-AAAAAGGAGTTTGTGGTTTAATTGTTCAACAAGAAGATATGCCTTTTAAC 4877 Query 193533 GCTTCAGGTA-TGGTACCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGAC 193591 | | ||||| | || |||||||||||||| || ||| || || | || || ||||||| Sbjct 4876 GATAAAGGTACTTGT-CCAGATATTATTATGAACCCACATGGTTTCCCTTCTCGAATGAC 4818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634703304946360