Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1300 102 1e-16 seq4777 89.7 6e-13 >seq1300 Length=16371 Score = 102 bits (112), Expect = 1e-16 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 192992 ACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTG 193050 ||||||||| |||| ||| ||||||||| || || |||| | ||||||||||| || Sbjct 14955 ACGTATACCAGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGAACTGTTG 15013 Query 193051 GTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTA 193110 |||| ||||| |||||||||||||||||||||| | ||| || |||||| | | Sbjct 15014 GTATACTTTATAGACAAGAAGATATGCCATTTACATCAGAAGGAATATGTCCAGATGTAA 15073 Query 193111 TTATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 | || |||||| || || || || ||||||| ||| Sbjct 15074 TAATCAATCCACATGCCATACCATCACGAATGACAATT 15111 >seq4777 Length=9450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 192967 TAGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGG 193026 |||| |||||| || | | || | | | ||||||| | || |||||||| | ||| Sbjct 4995 TAGTCAAAGTTCTTTTAAGACAAACAAGAAGACCTGAACTTGGTGATAAATTCTCTTCTA 4936 Query 193027 GA-ATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACA 193085 || |||| | |||||||| ||||||| | ||| | ||||||||||||||| |||| Sbjct 4935 GACATGGTC-AAAAAGGAGTTTGTGGTTTAATTGTTCAACAAGAAGATATGCCTTTTAAC 4877 Query 193086 ACTTCAGGTA-TGGTACCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGAC 193144 | ||||| | || |||||||||||||| || ||| || || | || || ||||||| Sbjct 4876 GATAAAGGTACTTGT-CCAGATATTATTATGAACCCACATGGTTTCCCTTCTCGAATGAC 4818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 193380 AAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGG--CAAGTG-ACTACTTTA 193436 || |||||||| ||||||||||||||| || || | || |||| | | || || | Sbjct 4486 AAGCACATGGTATTGGATAAAATGCATGCAAG-AGCAAGAGGACCAAGAGCAGTA-TTAA 4429 Query 193437 CATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAA 193496 || |||||||| | | || | ||| || |||||| ||| |||| ||||| |||||| Sbjct 4428 CA-CGACAACCGACTGAAGGAAGATCTAGAGATGGAGGATTACGATTAGGAGAGATGGAA 4370 Query 193497 AAAGACTGTATTTTAGTCCATGGTGCTACTCAATT-CTTAAATGAAAGAATGTTTTTGTA 193555 | ||| ||| | ||| ||||| ||| ||||||| ||| | |||||| | | | Sbjct 4369 AGAGATTGTTTGATAGCTCATGGAGCTTCTCAATTACTTTTA-GAAAGATTAATGCTTAG 4311 Query 193556 TTCTGATCCTTTTCAAGTCGATGTTTG 193582 ||| ||| ||||| || | |||||||| Sbjct 4310 TTCAGATTCTTTTGAATTAGATGTTTG 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628061867896320