Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4816 131 1e-24 seq1158 131 1e-24 seq4656 127 2e-23 seq17959 122 7e-22 seq3790 111 1e-18 >seq4816 Length=9410 Score = 131 bits (144), Expect = 1e-24 Identities = 483/751 (64%), Gaps = 22/751 (3%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 |||| ||| ||||| | ||| ||||| || ||||||||||| ||||| |||| | | | | Sbjct 2604 AGAACAGCAGCTTGCACAGCGGCACCGTACGCAACAGCTTCGTCAGGGTTAATACTCTTA 2545 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875 || |||| ||| |||||||| |||| ||| | | ||| ||||| || | | Sbjct 2544 TTCAGTTGACGCCCACCGAAAAAATCCGAAACAAGGGATTGGATCTTGGGAATTCGCGTT 2485 Query 281876 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 281935 ||||| ||||| | |||||| || | |||| ||| || || | ||| | ||| | Sbjct 2484 GATCCACCAACAAGTACAATGTCCTCGACCTTTGACTTGTCAATTTTGGCGTCCTTGAGC 2425 Query 281936 ACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC--AAAGTTCTTCGAATT 281993 ||||| || || || |||||| || | | | || || | | |||||||||| Sbjct 2424 ACTTTGTCTACAGGATCAAGAGTAGAACGGA--ATGTTTGCGCGTTGATTTCTTCGAATC 2367 Query 281994 TAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCG 282053 |||| | || | | | |||| | |||| ||| | |||||| || || | | Sbjct 2366 GGGCTCGGGAAATTGCCGAAGAAAAATCGGTGCCTTGGAAAAGAGAATCGACCTCGACGG 2307 Query 282054 TAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC 282113 ||||||||||| || || || | || || || |||||||| |||| | || | | Sbjct 2306 TAGTTTGAGTCACTGAGGAGAGGGTTCGCTTGGCTCGTTCACAAGCTGAACGGAGGCGAC 2247 Query 282114 GTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATC-TTCAACA 282172 | | ||| || || | || || ||||| |||||| || ||| | Sbjct 2246 GGAGGGCCCGGGCGTCACCATCAATGTCAAGCTTGGTTTTTCGCTTGAACTCATTCTTGA 2187 Query 282173 CACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 282230 ||||| | |||| ||| ||||| || || |||||||| | ||| | |||| | Sbjct 2186 ---AATGTTCGAGAAGAGCATTGTCAAAGTCCTCGCCTCCCAAGTGAGTGTCACCTGCAG 2130 Query 282231 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCAC 282290 | ||| | || || | ||| | | | || | |||| ||||||| || |||| Sbjct 2129 TGGCTTTGACCGTAAAGACGCCACCAGCGATGGAAAGGAGAGAAACATCAAAAGTGCCAC 2070 Query 282291 CACCCATATCAAAAATAAGTACA-TTCATT--TCTTTGTCTTGGTT---------TTTAT 282338 | || | |||||| || | ||| ||| || | ||| |||| || || | Sbjct 2069 CTCCTAGATCAAAGATCAACACAGTTCTTTCCTTTTTTTCTTTTTTGTCGCCAGCTTCAC 2010 Query 282339 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 282398 | | |||||| || | || || ||||||||||||||||| || | | || | || | Sbjct 2009 CCAAACCATAGGCGATTGCGGCGGCAGTTGGTTCATTAATGATACGGAGCACGTCCAGCC 1950 Query 282399 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 282458 |||| || || ||||| || |||| | | || ||||| || || || ||||| | Sbjct 1949 CAGCGATAGCACCGGCATCCTTTGTGGACAGCCGCTGAGAATCATTGAAGTAAGCAGGCA 1890 Query 282459 CAGTAATAACGGCATCTGTTACTTCTTTTCC 282489 | || || ||||| | | ||||| || || Sbjct 1889 CCGTGATGACGGCCTTCTTGACTTCCTTGCC 1859 >seq1158 Length=16965 Score = 131 bits (144), Expect = 1e-24 Identities = 286/426 (67%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || || || ||||| || || |||||| || | ||| || || || | || || ||| Sbjct 11538 TTCGTGATGGTAATTTTGTTCGATTTGCCCGTCGTTTTGTCGGCCGCTGAGACGTTGAGA 11597 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || ||||||||||||| |||||| ||||| || ||||| || || |||| | |||||| Sbjct 11598 ATTCCATTGGCATCCACATCAAAGGTGACCTCGATTTGTGGAACACCTCGTGGCGCAGGT 11657 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | |||| | || || ||||| ||||| ||| | ||||| Sbjct 11658 GGGATTCCAGAAAGTTCAAATTTACCAAGCAGGTTATTGTCTTTGGTGCGTGCACGTTCC 11717 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA-CTCT 281619 || || | | |||||| || ||| ||| || || | || || | || | |||| Sbjct 11718 CCTTCATAGACTTGGATCAATACGCCAGGTTGGTTGTCGGCGTATGTAGAGAAGATCTCT 11777 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||| || ||||| || |||||||| | || | | ||| | | ||| || || Sbjct 11778 -CCTTTCTTCGTAGGAACAGTGGTGTTTCTCTTGATGAGAGGGGTGAAGACACCGCCGGC 11836 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 ||||| | || | ||| || |||| ||| |||| || | | | |||| ||||| Sbjct 11837 CGTTTCAATTCCCATAGAGAGGGGAGCGACGTCAAGGAGTAGGAGGTCTTGAGTCTTTTC 11896 Query 281740 ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 || | || || |||||||| || | ||| |||||||||||||| ||||| || Sbjct 11897 TGATGTATCTCCCGTTAGGATAGCTGCCTGCACAGCCGCACCATATGCAACGGCTTCGTC 11956 Query 281800 AGGATT 281805 ||| || Sbjct 11957 AGGGTT 11962 Score = 107 bits (118), Expect = 1e-17 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 ||||||||||| ||||| || || ||||||| | ||| | || | || ||| | || Sbjct 12470 ACAAGACGATTGTCAAAGTCCTCTCCTCCCAGATGAGTGTCACCGGCAGTCGCTTTGACC 12529 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || || | | | ||| | |||||| |||||| || |||| ||| Sbjct 12530 TCAAAGATACCTTCCTCGATGGTTAGAAGTGATACATCAAAGGTTCCTCCTCCCAGGTCA 12589 Query 282302 AAAATAAGTACATTCATTTCTTTGTCT-TGGTTTT--TATCAAGACCATACGCAAAAGCA 282358 ||||| | ||| || ||| | | ||||||| | || | ||||| || | ||| Sbjct 12590 AAAATCAATACGTTACGTTC---GCCAGTGGTTTTCTTGTCCAAGCCATAAGCGATGGCA 12646 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 |||||||| || || || || |||| || || || ||||| |||||| || ||||| Sbjct 12647 GCAGCAGTAGGCTCGTTGATGATTCGCAGTACGTTCAGACCCGCAATTAGGCCAGCATCC 12706 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 |||||||| || | || || ||||| || || || || ||||| Sbjct 12707 TTAGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACAGT 12750 Score = 104 bits (114), Expect = 2e-16 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 || || || || || | ||| ||| || || | ||| | |||| ||||||||||| Sbjct 13097 CGCTTGGCGTCGAAGACAGTGTTGTGGGGGTTCATAGCAACCTGATTCTTGGCTGCATCA 13156 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 ||||||||| | |||| || || |||| || ||||| || || || || ||||| ||| Sbjct 13157 CCAATCAGACGCTCTGAGTCGGTGAATGCCACGTATGAAGGGGTGGTCCGGTTACCCTGA 13216 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 || || ||||| ||||| ||| | | ||||||||||| || ||||| Sbjct 13217 TCGTTGGCAATGATTTCCACTCGATCGTTTTGCCATACTCCGACACA 13263 >seq4656 Length=9592 Score = 127 bits (140), Expect = 2e-23 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 282655 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAC 282714 ||||| || | || ||| || | || || || ||||| | ||| ||| |||||| | Sbjct 6530 GTCATCGAATTTTCGACCGATGAGACGCTTGGCGTCAAAGACAGTGTTGTGTGGATTCAT 6471 Query 282715 TGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATA 282774 || | || | |||||| ||||| ||||| ||| | |||| || || || | ||| || Sbjct 6470 AGCCACCTGGTTTTTGGCGGCATCGCCAATGAGACGCTCTGAGTCGGTGAAAGCAACGTA 6411 Query 282775 TGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCA 282834 || || || ||||| ||||| ||||| || || || ||||||||| |||||||||| Sbjct 6410 AGAAGGGGTGGTGCGGTTACCCTGATCGTTGGCGATGATTTCAACTCGGTCATTTTGCCA 6351 Query 282835 TACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||| || ||||| | | || || || | ||||||||||||||| Sbjct 6350 TACTCCGACACAGGAATAGGTAGTGCCGAGATCAATACCAATAGC 6306 Score = 100 bits (110), Expect = 2e-15 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || ||||| || ||||| ||||||||||| | | ||| | || | || || | ||| Sbjct 7135 ACGAGACGGTTGTCAAAGTCTTCACCTCCAAGATGAGTGTCACCAGCGGTGGCCTTGACT 7076 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | || || || | || | ||||| |||||| || ||||| || | ||| Sbjct 7075 TCAAAGATGCCTTCCTCGATAGTGAGAAGAGAAACATCGAACGTCCCACCTCCGAGATCG 7016 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGG---TTTTTATCAAGACCATACGCAAAAGCA 282358 ||||| | ||||| || | | | ||||| || ||||| || |||| ||| Sbjct 7015 AAAATCAAGACATTGCGCTC---GCCAGAGGTCTTTTTGTCCAGACCGTAGGCAATGGCA 6959 Query 282359 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 282418 || ||||| || || || || || ||||| || || | || |||||| || || || Sbjct 6958 GCTGCAGTAGGCTCGTTGATGATCCTCAATACGTTCAATCCGGCAATTAAGCCGGCGTCC 6899 Query 282419 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAAC 282468 ||||| ||||| | ||| || || |||||||| || || ||||| | ||| Sbjct 6898 TTAGTTGCTTGACGTTGGGAGTCATTAAAATAGGCTGGGACAGTGACAAC 6849 >seq17959 Length=3452 Score = 122 bits (134), Expect = 7e-22 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 282655 GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAAC 282714 ||||| || | || ||| || | ||||| |||||||||||||| || ||| |||| Sbjct 2991 GTCATCGAATTTTCGACCGATGAGACGTTTGGCATCAAAAATAGTGTTTTGTGGGTTAAT 3050 Query 282715 TG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACAT 282773 | || |||| | |||||| ||||| ||||| ||| | |||| | || || | ||| | Sbjct 3051 GGCCACCTTG-TTTTTGGCGGCATCGCCAATGAGACGCTCTGAGTTGGTGAAAGCAACGT 3109 Query 282774 ATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCC 282833 | || || || ||||| ||||| ||||| || || || || |||||| ||||||||| Sbjct 3110 AAGAAGGTGTGGTGCGGTTACCCTGATCGTTGGCGATGATCTCAACTCGGTCATTTTGCC 3169 Query 282834 ATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 |||| || ||||| | | | || || | ||| ||||||||||| Sbjct 3170 ATACTCCGACACAGGAATAGGAAGTACCGAGATCGATACCAATAGC 3215 >seq3790 Length=10706 Score = 111 bits (122), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 394697 GATTCAGTTGTCAATCAATTTTTAGCTGAAATGGATGGATTGGAGGTTTTCAATAACCTT 394756 |||||||| ||||||||||| ||| || ||||||||||| |||| || ||||| || Sbjct 9153 GATTCAGTGGTCAATCAATTATTATCTAAAATGGATGGAGTGGATCAATTAAATAATATT 9212 Query 394757 ATTTGTATTGGAATTACTAATAGATTGGAATTACTTGATCCAGCAACAATTAGATCGGGT 394816 | ||||||||| |||||| |||| || | ||||| ||| | | ||| | ||| Sbjct 9213 TTAATTATTGGAATGACTAATCGATTAGATATGATTGATGAAGCTTTACTAAGACCAGGT 9272 Query 394817 CGATTTGGAATTCACATTAAAATCGATTTACCGGATCAAGAAGGTCGAGTTAAAATTTTC 394876 ||||| | | |||| || ||||| ||||| ||| || | ||||| | ||||||| Sbjct 9273 CGATTAGAAGTTCATATGGAAATCTCATTACCTGATGAAAAGGGTCGTTTACAAATTTTA 9332 Query 394877 CAAATTCATAC 394887 | |||||||| Sbjct 9333 AACATTCATAC 9343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737697565748562