Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uromyces_20viciae-fabae_20[genbank_20GCA_5F000785685.1_202014-11-20] 59,737 sequences; 215,710,044 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7505 138 1e-27 >seq7505 Length=7180 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 |||||| | ||| || | || || || || || || || ||||||||||| || || || Sbjct 1766 TCCTCCACGGAGACGGAGAACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGC 1825 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | | | | || || || ||||| || || ||||| | |||||||||||| |||| Sbjct 1826 CAATGTTCGGCCA-TCCTCAAGTTGTTTACCAGCGAAAATGAGACGCTGCTGATCAGGCG 1884 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| ||||| || |||||||| || || ||| | |||||| |||||||||| Sbjct 1885 GGATGCCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCAATTGTGTCAGACGATTCCA 1944 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | |||||||||||||||||| || Sbjct 1945 CTTCCAAAGTAATGGTTTTACCGGTCAA 1972 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||| || | || |||||||||||||||||||| || | Sbjct 2924 CCTCCACGTAGACGGAGCACGAGATGCAAAGTAGATTCCTTTTGAATGTTGTAATCAGCT 2983 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| || ||||| ||||| ||||||||||| || || Sbjct 2984 AGGGTACGGCCATCTTCTAGTTGTTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 3043 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || ||| ||||| || | || ||||| ||||| || Sbjct 3044 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCAATCGTATCGGAGGATTCAACC 3103 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAA 134692 ||||| ||||| || || |||||||| Sbjct 3104 TCGAGTGTAATAGTCTTGCCGGTTAA 3129 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| ||||| || | ||||||||||| || |||||||| || | Sbjct 2351 CCTCCGCGCAGACGCAAGACGAGATGCAAGGTGGATTCCTTCTGGATGTTGTAATCTGCG 2410 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || || || || || ||||| || || || || || || || || Sbjct 2411 AGGGTGCGACCGTCTTCAAGTTGCTTACCGGCAAAGATTAATCGTTGTTGGTCAGGTGGA 2470 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || |||||||| || ||| || || | |||||| |||||||| || Sbjct 2471 ATACCTTCCTTGTCTTGAATCTTGGCTTTTACATTATCAATTGTGTCAGACGATTCGACC 2530 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || || || || || || Sbjct 2531 TCAAGCGTTATTGTCTTCCCAGT 2553 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| |||||||| | || || |||||||| ||||||||||| ||| ||| | Sbjct 3507 AGACGCAAGACGAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGT 3566 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || || || || || ||||| ||||| || ||||| || || || || ||||| Sbjct 3567 CCATCCTCAAGTTGCTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGGATACCTTCC 3626 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||| || || || || || || || Sbjct 3627 TTGTCTTGAATCTTGGCCTTCACGTTATCAATGGTGTCTGATGACTCGACTTCAAGGGTG 3686 Query 134676 ATGGTTTTACCGGTTAAA 134693 || || || || |||||| Sbjct 3687 ATTGTCTTCCCAGTTAAA 3704 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||| ||||||||||| || | | |||| | || ||||| || || || Sbjct 3240 GTCGATTCCTTCTGAATGTTGTAATCCGCTAAGGTGCGGCCATCCTCGAGTTGCTTTCCA 3299 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || ||||| | || ||||| || || || ||||||||||| ||||| || || ||| Sbjct 3300 GCGAAAATTAGCCGTTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCCTTG 3359 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || ||| | |||||||| || || || || | ||| || || || || || || Sbjct 3360 ACATTGTCGATGGTGTCGGAAGACTCAACCTCCAAAGTGATAGTCTTTCCAGTCAA 3415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505021012697240